Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_F14
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524... 30 0.51
09_02_0196 - 5678744-5679222,5679304-5679937 29 0.89
11_06_0669 - 26084906-26087350 29 1.2
02_05_0205 + 26755024-26756217 28 1.5
11_03_0127 - 10408628-10409106,10409188-10409821 28 2.0
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 28 2.0
11_01_0782 + 6543906-6544702,6545717-6547850 27 2.7
03_05_0480 + 24740567-24741559 27 2.7
06_03_0733 + 23976835-23976906,23977076-23977279,23977388-239776... 27 3.6
03_05_0308 - 22977542-22978174,22978202-22978387 26 6.2
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 26 8.3
11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793 26 8.3
05_07_0076 - 27520152-27520379,27520785-27521096,27521194-275213... 26 8.3
04_03_0976 + 21376873-21377289,21377399-21377581,21378463-213785... 26 8.3
03_06_0425 - 33847906-33848892 26 8.3
>01_06_0916 +
32950575-32950656,32952061-32952272,32952408-32952448,
32952916-32952959,32953259-32953561,32954145-32954302,
32954849-32954965,32955562-32955747,32955872-32956031,
32956079-32956151,32958613-32958889,32959024-32959099,
32960653-32960720,32961270-32961361,32961505-32961578,
32961777-32961820,32962155-32962206,32962585-32962704,
32962777-32962889,32963023-32963110,32963492-32963577,
32964172-32964258,32964491-32964594,32964996-32965098,
32965250-32965345,32965456-32965645,32965777-32965838,
32966014-32966118,32966782-32966983,32967092-32967300,
32968510-32968673,32968799-32968850,32968935-32969021,
32969319-32969441,32969567-32969605,32969606-32969860
Length = 1447
Score = 29.9 bits (64), Expect = 0.51
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 130 GALISDFFEKHKLEIHELTNIVTEMFKDITRLIVAQLKELPGKITQV 270
G +IS+ EKHKLE+ LT + F+ + ++A L+ L T +
Sbjct: 23 GGVISEIREKHKLELENLT-LTKHPFRTLRFFMLAMLQYLKRLATYI 68
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/54 (24%), Positives = 33/54 (61%)
Frame = +1
Query: 85 LQEYLESFIDIVAHFGALISDFFEKHKLEIHELTNIVTEMFKDITRLIVAQLKE 246
L+ ++S + +H A I +FF+ + +IHEL++ + +++ L+ ++L++
Sbjct: 1271 LEVVIQSTVKDPSHLDARIDEFFKMFESKIHELSD--KDFKRNVKSLVDSKLEK 1322
>09_02_0196 - 5678744-5679222,5679304-5679937
Length = 370
Score = 29.1 bits (62), Expect = 0.89
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 109 IDIVAHFGALISDFFEKHKLEIHELTNIVTEMFKDITRLIVAQLK 243
+ +++ + + DF+E+ LEI + V E+ ++T L V QL+
Sbjct: 118 VTLLSRWAEAVDDFYEEALLEIDDQQRRVGELESEVTDLTVHQLQ 162
>11_06_0669 - 26084906-26087350
Length = 814
Score = 28.7 bits (61), Expect = 1.2
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 61 LYETLGKMLQEYLESFIDIVAHFGALISDFFEKHKLEIHELTNI-VTEMFKDITRLIVAQ 237
L ET+G + Y + V A S F +H+LE HEL N+ V E F IT V
Sbjct: 305 LNETMGALWWSY-QHLDQQVRRCFAYCSIFPRRHRLERHELINLWVAEGF--ITTTEVGL 361
Query: 238 LKELPGKITQVYEELV 285
E G+ + +EELV
Sbjct: 362 EMEAVGR--KYFEELV 375
>02_05_0205 + 26755024-26756217
Length = 397
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 118 VAHFGALISDFFEKHKLEIHELTNIVTEMFKDITRLIVAQLK 243
++ + + DF+E+ LEI++ V E+ ++T L V QL+
Sbjct: 121 LSRWAEAVDDFYEEALLEINDQQRRVGELETEVTDLTVQQLQ 162
>11_03_0127 - 10408628-10409106,10409188-10409821
Length = 370
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +1
Query: 109 IDIVAHFGALISDFFEKHKLEIHELTNIVTEMFKDITRLIVAQLK 243
+ +++ + + DF+E+ LEI + + E+ ++T L V QL+
Sbjct: 118 VTLLSRWAEAVDDFYEEALLEIDDQQRHMGELETEVTDLTVQQLQ 162
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 58 GLYETLGKMLQEYLESFIDIVAHF 129
G+Y+ L L YL+S +DI+A+F
Sbjct: 396 GVYKCLDGSLNRYLDSCLDIIANF 419
>11_01_0782 + 6543906-6544702,6545717-6547850
Length = 976
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 166 LEIHELTNIVTEMFKDITRLIVAQLKELPGKITQVYEELVKL 291
L++ E T++ + + L + + L GK+T++ EE+ KL
Sbjct: 566 LDLEECTDLDDDHLIQVCNLFLLRYLSLGGKVTKLPEEITKL 607
>03_05_0480 + 24740567-24741559
Length = 330
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 118 VAHFGALISDFFEKHKLEIHELTNIVTEMFKDITRLIVAQLK 243
++ + + DF+E+ LEI + V E+ ++T L V QL+
Sbjct: 54 LSRWAEAVDDFYEEALLEIDDQQRRVGELETEVTDLTVQQLQ 95
>06_03_0733 +
23976835-23976906,23977076-23977279,23977388-23977645,
23978002-23978217,23978324-23978479,23978556-23978867,
23978957-23979044,23979224-23979372,23979465-23979755
Length = 581
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 97 LESFIDIVAHFGALISDFFEKHKLEIHELTNIVTEMFKDITRLIVAQLKEL 249
+ S +D V GAL D E+ +LE+ L + KDI +L+++
Sbjct: 282 ISSTLDEVTAPGALDIDLIEQAELEVERLDQLKASRMKDIAFKRQTELEDI 332
>03_05_0308 - 22977542-22978174,22978202-22978387
Length = 272
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 118 VAHFGALISDFFEKHKLEIHELTNIVTEMFKDITRLIVAQLK 243
++ + + DF+E+ LEI + + E+ ++T L V QL+
Sbjct: 5 LSRWAEAVDDFYEEALLEIDDQQRRLGELETEVTDLTVQQLQ 46
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 43 RNSARGLYETLGKMLQ-EYLESFIDIVAHFGALISDFFEKHKLEIHELTNIVTE 201
R S LY K LQ LE DIV ++D E K+ +H+++ +V +
Sbjct: 704 RVSCTCLYGGTSKGLQLRELERGADIVVATPGRLNDILEMRKISLHQVSFLVLD 757
>11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793
Length = 576
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 139 ISDFFEKHKLEIHELTNIVTEMFKDITRLIVAQLK 243
+ DF+E+ LEI + + E+ ++T L V QL+
Sbjct: 307 VDDFYEEALLEIDDQQRHLGELETEVTDLTVQQLQ 341
>05_07_0076 - 27520152-27520379,27520785-27521096,27521194-27521333,
27521893-27521956,27522071-27522277,27522350-27522493,
27522578-27522709,27522880-27524294,27524647-27524920,
27526096-27526129,27527028-27527059
Length = 993
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 10 RRSRIVDPPGCRNSARGLYETLGKMLQEYLESF 108
R S + GC+NS+ G L K+L + + +F
Sbjct: 952 RDSAYISDDGCKNSSTGFKIMLAKLLPKLVTTF 984
>04_03_0976 +
21376873-21377289,21377399-21377581,21378463-21378591,
21378869-21378999,21379111-21379270,21379783-21380067
Length = 434
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +1
Query: 172 IHELTNIVTEMFKDITRLIVAQLKELPGKITQVYEELVKLINN 300
+ ELT+ V+ + + R I ++L + GK+ +V +EL L+++
Sbjct: 212 LDELTSKVSTLNLERVRQIKSRLVAISGKVQKVRDELEHLLDD 254
>03_06_0425 - 33847906-33848892
Length = 328
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 118 VAHFGALISDFFEKHKLEIHELTNIVTEMFKDITRLIVAQLK 243
++ + + DF+E+ LEI + V E+ ++T L QL+
Sbjct: 52 LSRWAEAVDDFYEEALLEIDDQQRRVGELETEVTDLTAQQLQ 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,274,113
Number of Sequences: 37544
Number of extensions: 124264
Number of successful extensions: 519
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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