Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_F14
(330 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK125790-1|BAC86292.1| 203|Homo sapiens protein ( Homo sapiens ... 30 1.5
AL136924-1|CAB66858.1| 861|Homo sapiens hypothetical protein pr... 28 6.0
AL132821-2|CAI23572.1| 944|Homo sapiens Ras and Rab interactor ... 28 6.0
AL049538-1|CAI19340.1| 944|Homo sapiens Ras and Rab interactor ... 28 6.0
AB060339-1|BAB84317.1| 895|Homo sapiens RIN2 protein. 28 6.0
AB040936-1|BAA96027.2| 4464|Homo sapiens KIAA1503 protein protein. 28 6.0
BC113686-1|AAI13687.1| 511|Homo sapiens keratin 72 protein. 28 8.0
AY033496-1|AAK55109.1| 511|Homo sapiens keratin protein K6irs p... 28 8.0
AY033495-1|AAK55108.1| 510|Homo sapiens keratin protein K6irs p... 28 8.0
>AK125790-1|BAC86292.1| 203|Homo sapiens protein ( Homo sapiens
cDNA FLJ43802 fis, clone TESTI4000462. ).
Length = 203
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 137 SAPKCATISMKLSRYSCSILPKVSYSPRAEFLQPGG 30
++P ++LSR S S LP S+SP A+ + PGG
Sbjct: 163 ASPGAKVPRVRLSRLSSSCLPVASFSP-AQLMPPGG 197
>AL136924-1|CAB66858.1| 861|Homo sapiens hypothetical protein
protein.
Length = 861
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 63 QPSCRIPAARGIHYSRAPPPR 1
+PS R P A G +R+PPPR
Sbjct: 256 RPSTRTPNANGTERTRSPPPR 276
>AL132821-2|CAI23572.1| 944|Homo sapiens Ras and Rab interactor 2
protein.
Length = 944
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 63 QPSCRIPAARGIHYSRAPPPR 1
+PS R P A G +R+PPPR
Sbjct: 339 RPSTRTPNANGTERTRSPPPR 359
>AL049538-1|CAI19340.1| 944|Homo sapiens Ras and Rab interactor 2
protein.
Length = 944
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 63 QPSCRIPAARGIHYSRAPPPR 1
+PS R P A G +R+PPPR
Sbjct: 339 RPSTRTPNANGTERTRSPPPR 359
>AB060339-1|BAB84317.1| 895|Homo sapiens RIN2 protein.
Length = 895
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 63 QPSCRIPAARGIHYSRAPPPR 1
+PS R P A G +R+PPPR
Sbjct: 290 RPSTRTPNANGTERTRSPPPR 310
>AB040936-1|BAA96027.2| 4464|Homo sapiens KIAA1503 protein protein.
Length = 4464
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +1
Query: 115 IVAHFGALISDFFEKHKLEIHELTNIVTEMFKDITRLIVAQLKELPGKITQVY 273
I+ FG +I+ + + E+ + N+VTE D+ +V + P K+ ++
Sbjct: 2599 IIRIFGTMINQKLQDFEEEVKPIGNVVTEATLDMYNTVVQRFLPTPTKMHYLF 2651
>BC113686-1|AAI13687.1| 511|Homo sapiens keratin 72 protein.
Length = 511
Score = 27.9 bits (59), Expect = 8.0
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Frame = +1
Query: 1 TRWRRSRIVDPPGCRNSARGLYETLGKMLQEYLESF------IDI-VAHFGALISDFFEK 159
T+W + +D CR + +YE LQ+ LE +D + + L+ D+ ++
Sbjct: 155 TKWNLLQQLDLNNCRKNLEPIYEGYISNLQKQLEMLSGDGVRLDSELRNMQDLVEDYKKR 214
Query: 160 HKLEIHELT---NIVTEMFKDITRLIVAQLKELPGKITQVYEEL 282
+++EI+ T N + KD+ + ++ EL K+ + +E+
Sbjct: 215 YEVEINRRTAAENEFVVLKKDVDAAYMNKV-ELQAKVDSLTDEI 257
>AY033496-1|AAK55109.1| 511|Homo sapiens keratin protein K6irs
protein.
Length = 511
Score = 27.9 bits (59), Expect = 8.0
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Frame = +1
Query: 1 TRWRRSRIVDPPGCRNSARGLYETLGKMLQEYLESF------IDI-VAHFGALISDFFEK 159
T+W + +D CR + +YE LQ+ LE +D + + L+ D+ ++
Sbjct: 155 TKWNLLQQLDLNNCRKNLEPIYEGYISNLQKQLEMLSGDGVRLDSELRNMQDLVEDYKKR 214
Query: 160 HKLEIHELT---NIVTEMFKDITRLIVAQLKELPGKITQVYEEL 282
+++EI+ T N + KD+ + ++ EL K+ + +E+
Sbjct: 215 YEVEINRRTAAENEFVVLKKDVDAAYMNKV-ELQAKVDSLTDEI 257
>AY033495-1|AAK55108.1| 510|Homo sapiens keratin protein K6irs
protein.
Length = 510
Score = 27.9 bits (59), Expect = 8.0
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Frame = +1
Query: 1 TRWRRSRIVDPPGCRNSARGLYETLGKMLQEYLESF------IDI-VAHFGALISDFFEK 159
T+W + +D CR + +YE LQ+ LE +D + + L+ D+ ++
Sbjct: 155 TKWNLLQQLDLNNCRKNLEPIYEGYISNLQKQLEMLSGDGVRLDSELRNMQDLVEDYKKR 214
Query: 160 HKLEIHELT---NIVTEMFKDITRLIVAQLKELPGKITQVYEEL 282
+++EI+ T N + KD+ + ++ EL K+ + +E+
Sbjct: 215 YEVEINRRTAAENEFVVLKKDVDAAYMNKV-ELQAKVDSLTDEI 257
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,934,723
Number of Sequences: 237096
Number of extensions: 641297
Number of successful extensions: 1567
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1566
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1743854340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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