Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F13
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   0.69 
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    25   3.7  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   3.7  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    24   6.4  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   8.5  

>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 27.5 bits (58), Expect = 0.69
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 212 SVRRSKLKYKN*TPIKIKHCVREEFTEGMPEGNKQTLLRRRNEKN 78
           ++ RS  K K  +  +  H   E+ T+GMP  N+Q     R  KN
Sbjct: 35  NIPRSSAKTKEHSADRKPHRNSEKKTQGMPRKNQQLASSERKTKN 79


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 49  CKMDS*QHQQFFSFRLLSSVCLLPSGI 129
           CK +    ++FF+ RL +SV   P GI
Sbjct: 60  CKFNKNSFEKFFARRLSNSVAPTPGGI 86


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 147 SNAVFYFNWRLIFIL*F*TPY 209
           S+ +FYFNW   F++ F  PY
Sbjct: 244 SSKIFYFNWLGFFVV-FWNPY 263


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 197 LNAVLISCREEVATSFESGFSRVVY 271
           L   L+ C+E + T F+ GF+  VY
Sbjct: 258 LRLSLLHCKEALKTRFDFGFNVKVY 282


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 59  SILHTPARPMFPRAEYFQP 3
           S+L+TP + +F R EY  P
Sbjct: 697 SLLNTPVKILFGRTEYTYP 715


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,322,964
Number of Sequences: 5004
Number of extensions: 22798
Number of successful extensions: 49
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)