Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F13
         (366 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    29   1.1  
04_04_0243 - 23858975-23860706,23861178-23861230,23861338-238615...    28   2.6  
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148...    27   4.5  
03_01_0355 - 2789680-2791263                                           27   6.0  
03_06_0372 + 33446153-33446665,33446744-33446993,33447347-334475...    26   7.9  

>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 121 KVINKHCLEGGMKKTADVVSYPSYTRPPVRCSLVPNTSS 5
           ++I +HC  G + + A+ +S PS+  PP    L+ NT +
Sbjct: 702 EMIMQHCGPGNVSRPAERISLPSWVPPPAGVFLI-NTDA 739


>04_04_0243 -
           23858975-23860706,23861178-23861230,23861338-23861538,
           23861649-23861990,23862277-23862423,23862945-23863086,
           23863876-23863959,23864772-23864779
          Length = 902

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -3

Query: 118 VINKHCLEGGMKKTADVVSYPSYTRPPVRCSLVPNTS 8
           +IN HC EG +KK  ++  + + +R  VR ++V  T+
Sbjct: 667 LINGHCKEGNVKKALEI--FENMSRRGVRATVVTYTA 701


>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
            31615047-31616835,31617136-31617163,31617343-31617794
          Length = 1715

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 170  LAFNFYTLILNAVLISCREEVATSFES 250
            +AFN  T ILN  +I+C   V+ SFE+
Sbjct: 1114 VAFNNLTSILNFRIINCPNLVSVSFEA 1140


>03_01_0355 - 2789680-2791263
          Length = 527

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -2

Query: 128 MPEGNKQTLLRRRNEKNXXXX*LSILHTPARPMFPRAE 15
           MPE  + T L  RN K        +LHT       RAE
Sbjct: 236 MPETARYTALIARNAKQAAADMSKVLHTQIEESADRAE 273


>03_06_0372 +
           33446153-33446665,33446744-33446993,33447347-33447501,
           33447593-33447805,33447926-33448113,33448282-33448540
          Length = 525

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 84  FIPPSKQCLFITFRHTFRKFFSNAV 158
           ++P S   L I FR+ F+K+ +N V
Sbjct: 394 YVPTSSDNLIIAFRNWFKKYCNNQV 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,177,997
Number of Sequences: 37544
Number of extensions: 129661
Number of successful extensions: 270
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)