Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F13
         (366 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69904-5|CAA93778.1|  250|Caenorhabditis elegans Hypothetical pr...    28   1.8  
Z81512-4|CAB04170.1|  550|Caenorhabditis elegans Hypothetical pr...    27   3.1  
Z66567-8|CAA91494.1|  402|Caenorhabditis elegans Hypothetical pr...    27   3.1  
Z66561-9|CAA91462.1|  402|Caenorhabditis elegans Hypothetical pr...    27   3.1  
AL117204-35|CAB55154.2|  861|Caenorhabditis elegans Hypothetical...    27   3.1  
AY204185-1|AAO39189.1|  400|Caenorhabditis elegans nuclear recep...    27   5.4  
AL022272-4|CAC42310.2|  391|Caenorhabditis elegans Hypothetical ...    27   5.4  
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z47356-8|CAD27185.1|  477|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z47075-8|CAA87381.2|  477|Caenorhabditis elegans Hypothetical pr...    26   7.2  
U10438-5|AAA19086.1|  395|Caenorhabditis elegans Nuclear hormone...    26   7.2  
AY204168-1|AAO39172.1|  395|Caenorhabditis elegans nuclear recep...    26   7.2  
AY204202-1|AAO39203.1|  339|Caenorhabditis elegans nuclear recep...    26   9.5  
AY204201-1|AAO39202.1|  409|Caenorhabditis elegans nuclear recep...    26   9.5  
AY204200-1|AAO39201.1|  304|Caenorhabditis elegans nuclear recep...    26   9.5  
AF408754-1|AAO27833.1|  418|Caenorhabditis elegans nuclear recep...    26   9.5  
AC084155-11|AAQ91893.1|  304|Caenorhabditis elegans Nuclear horm...    26   9.5  
AC084155-10|AAG23368.3|  418|Caenorhabditis elegans Nuclear horm...    26   9.5  

>Z69904-5|CAA93778.1|  250|Caenorhabditis elegans Hypothetical
           protein ZK20.5 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 182 FYTLILNAVLISCREEVATSFESGF 256
           FYT+ +  +L + R E+ATS E  F
Sbjct: 156 FYTIFIRIMLDTIRREIATSIEKSF 180


>Z81512-4|CAB04170.1|  550|Caenorhabditis elegans Hypothetical
           protein F25C8.4 protein.
          Length = 550

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 188 YKN*TPIKIKHCVREEFTEGMPEGNKQTLLRR 93
           Y N   I+ KH VR   T+ +P+    TLLRR
Sbjct: 485 YVNKRVIRYKHLVRVNITQFLPKSACGTLLRR 516


>Z66567-8|CAA91494.1|  402|Caenorhabditis elegans Hypothetical
           protein ZK455.6 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 166 K*NTAFEKNLRKVCRKVINKHCLEGGMK 83
           K N   EK+LR +CR      C+  GMK
Sbjct: 53  KGNCTVEKSLRNLCRSCRYTRCINEGMK 80


>Z66561-9|CAA91462.1|  402|Caenorhabditis elegans Hypothetical
           protein ZK455.6 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 166 K*NTAFEKNLRKVCRKVINKHCLEGGMK 83
           K N   EK+LR +CR      C+  GMK
Sbjct: 53  KGNCTVEKSLRNLCRSCRYTRCINEGMK 80


>AL117204-35|CAB55154.2|  861|Caenorhabditis elegans Hypothetical
           protein Y116A8C.14 protein.
          Length = 861

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 212 SVRRSKLKYKN*TPIKIKHCVREEFT 135
           +V+  +L     TP  IKHC REE T
Sbjct: 267 NVQPEELAPSKITPFPIKHCAREELT 292


>AY204185-1|AAO39189.1|  400|Caenorhabditis elegans nuclear receptor
           NHR-101 protein.
          Length = 400

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -3

Query: 160 NTAFEKNLRKVCRKVINKHCLEGGMKKTA-----DVVSYPSYTRPP 38
           N   +K++R  CR    + C++ GM K+A     D + Y   TR P
Sbjct: 57  NCPVDKSIRCACRFCRFEKCIQVGMDKSALQASRDRIGYTKRTRKP 102


>AL022272-4|CAC42310.2|  391|Caenorhabditis elegans Hypothetical
           protein H12C20.6a protein.
          Length = 391

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -3

Query: 160 NTAFEKNLRKVCRKVINKHCLEGGMKKTA-----DVVSYPSYTRPP 38
           N   +K++R  CR    + C++ GM K+A     D + Y   TR P
Sbjct: 48  NCPVDKSIRCACRFCRFEKCIQVGMDKSALQASRDRIGYTKRTRKP 93


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 130  VCRKVINKHCLEGGMKKTADVVSYPSYTRPPVRCSLVPN 14
            +C +VIN   LE G K       YPS   P ++C+ + N
Sbjct: 1576 ICGQVIN---LERGKKNYITSPGYPSAYLPGIKCNFLIN 1611


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 130  VCRKVINKHCLEGGMKKTADVVSYPSYTRPPVRCSLVPN 14
            +C +VIN   LE G K       YPS   P ++C+ + N
Sbjct: 1576 ICGQVIN---LERGKKNYITSPGYPSAYLPGIKCNFLIN 1611


>Z47356-8|CAD27185.1|  477|Caenorhabditis elegans Hypothetical
           protein E02H1.7 protein.
          Length = 477

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 136 RKVCRKVINKHCLEGGMKKTA 74
           RK CR    + CLE GM K A
Sbjct: 129 RKACRACRYRKCLESGMSKEA 149


>Z47075-8|CAA87381.2|  477|Caenorhabditis elegans Hypothetical
           protein E02H1.7 protein.
          Length = 477

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 136 RKVCRKVINKHCLEGGMKKTA 74
           RK CR    + CLE GM K A
Sbjct: 129 RKACRACRYRKCLESGMSKEA 149


>U10438-5|AAA19086.1|  395|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 10 protein.
          Length = 395

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
 Frame = -3

Query: 148 EKNLRKVCRKVINKHCLEGGMKKTA-----DVVSYPSYTR--PPVRCSLVPNTSSP 2
           +K++R  CR    + CL+ GM + A     D + Y   TR  PP++     +  SP
Sbjct: 63  DKSIRCACRHCRFEKCLQVGMDRNAIQQNRDPIGYTKRTRRYPPIKKVEASDECSP 118


>AY204168-1|AAO39172.1|  395|Caenorhabditis elegans nuclear receptor
           NHR-10 protein.
          Length = 395

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
 Frame = -3

Query: 148 EKNLRKVCRKVINKHCLEGGMKKTA-----DVVSYPSYTR--PPVRCSLVPNTSSP 2
           +K++R  CR    + CL+ GM + A     D + Y   TR  PP++     +  SP
Sbjct: 63  DKSIRCACRHCRFEKCLQVGMDRNAIQQNRDPIGYTKRTRRYPPIKKVEASDECSP 118


>AY204202-1|AAO39203.1|  339|Caenorhabditis elegans nuclear receptor
           NHR-114 protein.
          Length = 339

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = -3

Query: 172 QLK*NTAFEKNLRKVCRKVINKHCLEGGMKKTA-----DVVSYPSYTRPP 38
           Q + N   +K +R  CR    + CL  GM + A     D + Y   TR P
Sbjct: 52  QFEGNCPVDKTIRCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRP 101


>AY204201-1|AAO39202.1|  409|Caenorhabditis elegans nuclear receptor
           NHR-114 protein.
          Length = 409

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = -3

Query: 172 QLK*NTAFEKNLRKVCRKVINKHCLEGGMKKTA-----DVVSYPSYTRPP 38
           Q + N   +K +R  CR    + CL  GM + A     D + Y   TR P
Sbjct: 43  QFEGNCPVDKTIRCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRP 92


>AY204200-1|AAO39201.1|  304|Caenorhabditis elegans nuclear receptor
           NHR-114 protein.
          Length = 304

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = -3

Query: 172 QLK*NTAFEKNLRKVCRKVINKHCLEGGMKKTA-----DVVSYPSYTRPP 38
           Q + N   +K +R  CR    + CL  GM + A     D + Y   TR P
Sbjct: 52  QFEGNCPVDKTIRCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRP 101


>AF408754-1|AAO27833.1|  418|Caenorhabditis elegans nuclear receptor
           protein protein.
          Length = 418

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = -3

Query: 172 QLK*NTAFEKNLRKVCRKVINKHCLEGGMKKTA-----DVVSYPSYTRPP 38
           Q + N   +K +R  CR    + CL  GM + A     D + Y   TR P
Sbjct: 52  QFEGNCPVDKTIRCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRP 101


>AC084155-11|AAQ91893.1|  304|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 114, isoform b protein.
          Length = 304

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = -3

Query: 172 QLK*NTAFEKNLRKVCRKVINKHCLEGGMKKTA-----DVVSYPSYTRPP 38
           Q + N   +K +R  CR    + CL  GM + A     D + Y   TR P
Sbjct: 52  QFEGNCPVDKTIRCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRP 101


>AC084155-10|AAG23368.3|  418|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 114, isoform a protein.
          Length = 418

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = -3

Query: 172 QLK*NTAFEKNLRKVCRKVINKHCLEGGMKKTA-----DVVSYPSYTRPP 38
           Q + N   +K +R  CR    + CL  GM + A     D + Y   TR P
Sbjct: 52  QFEGNCPVDKTIRCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRP 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,305,258
Number of Sequences: 27780
Number of extensions: 127668
Number of successful extensions: 448
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)