Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_F11
(329 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 178 2e-46
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 85 2e-18
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 81 3e-17
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 26 1.7
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 1.7
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 26 1.7
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 25 2.2
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 3.9
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 3.9
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 24 5.2
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 24 6.8
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 23 9.0
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 23 9.0
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 178 bits (433), Expect = 2e-46
Identities = 76/101 (75%), Positives = 93/101 (92%)
Frame = +2
Query: 26 DPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKM 205
DPRHGRYLTVAA+FRG++SMKEVDEQ+ ++Q KNS+YFVEWIP+NV AVC +PP+ LKM
Sbjct: 304 DPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKM 363
Query: 206 AATFIGNSTAIQELCKRISEQFTAMFRRKAFLHWYTGEGMD 328
+ATFIGNST+IQE+ +R+ +QF+AMFRRKAFLHWYTGEGMD
Sbjct: 364 SATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMD 404
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 85.4 bits (202), Expect = 2e-18
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 8/109 (7%)
Frame = +2
Query: 26 DPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLK- 202
DPR GRY+ ++RG + ++V + I+ K + FV+W P K +CD PP+ ++
Sbjct: 306 DPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEG 365
Query: 203 -------MAATFIGNSTAIQELCKRISEQFTAMFRRKAFLHWYTGEGMD 328
A + N+T+I E R+ +F M+ ++AF+HWY GEGM+
Sbjct: 366 SEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGME 414
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 81.4 bits (192), Expect = 3e-17
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 8/109 (7%)
Frame = +2
Query: 26 DPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR---- 193
DPR GRY+ ++RG + ++V + +I+++ + FV+W P K +C PP+
Sbjct: 310 DPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPG 369
Query: 194 ----GLKMAATFIGNSTAIQELCKRISEQFTAMFRRKAFLHWYTGEGMD 328
+ A + N+T+I E R+ +F M+ ++AF+HWY GEGM+
Sbjct: 370 SGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGME 418
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 1.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 224 NSTAIQELCKRISEQFTAMFRRKAFLHWYTGEGMD 328
NS+ IQ L K I+ T +R ++ Y+G G+D
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGID 227
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 1.7
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 41 RYLTVAAIFRGRMSMKEVDEQMLNIQNKN--SSYFVEWIPNNVK 166
RYLT + + +++K V + +LN N++ + F+ W P K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 1.7
Identities = 11/53 (20%), Positives = 26/53 (49%)
Frame = +2
Query: 62 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFI 220
++ + ++ + + ++NI+ N S W+PN + +P G K++ I
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLI 395
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 2.2
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +2
Query: 41 RYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPN 157
+Y+ ++F G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 24.6 bits (51), Expect = 3.9
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 101 QMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG 223
++ +I+ K S++ E +P + TAV P GL +A TF+G
Sbjct: 375 RLWSIKEKAVSFWNE-LPELI-TAVAFSPDGGLAIAGTFVG 413
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 24.6 bits (51), Expect = 3.9
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +2
Query: 8 GFRHEG--DPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSY 136
G R EG + RYL A R+ D+Q+LN QN +
Sbjct: 821 GTRSEGGKNASASRYLNTALSPLARVLFNSNDDQLLNYQNDEGQW 865
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 24.2 bits (50), Expect = 5.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 202 LQSAGRDVAHGGLHVVRDPFHEVRRVLVLN 113
LQS R + GL +V P HE+ V LN
Sbjct: 1287 LQSWSRILERYGLKLVEAPIHEIAAVGELN 1316
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 23.8 bits (49), Expect = 6.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 196 TEDGGDLYR*LDRHPGAVQAHLGTVHRYVQTQGFLAL 306
+ED +YR + R P +Q T +V+ GF A+
Sbjct: 309 SEDIIRMYRLMSRTPNGLQPLRQTFEEFVKRSGFAAV 345
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 23.4 bits (48), Expect = 9.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 254 RISEQFTAMFRRKAFLHWYTGEGM 325
++ E+F+ +F RK L WY G+
Sbjct: 1714 KLLERFSLIFLRKCALLWYCRYGV 1737
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 23.4 bits (48), Expect = 9.0
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +2
Query: 110 NIQNKNSSYFVEWIPNNVKTAV 175
+ + +S+ + WIP N KT++
Sbjct: 6 SFSSTSSASSINWIPKNTKTSI 27
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,308,306
Number of Sequences: 5004
Number of extensions: 23141
Number of successful extensions: 81
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -