Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_F10
(486 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 111 7e-26
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 33 0.023
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 31 0.092
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 27 1.1
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 2.0
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 2.6
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 8.0
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 8.0
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 111 bits (266), Expect = 7e-26
Identities = 47/91 (51%), Positives = 66/91 (72%)
Frame = +3
Query: 213 LVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTN 392
LV+FLPALC+KMGVPY IVK K+RLG ++H+KT +A+T V D+ + +V A+ N
Sbjct: 162 LVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDAN 221
Query: 393 FNERYEELRRHWGGGVLGNKSNARIAKLEKA 485
F+ +Y+E RR WGGG++G K+ A +AK KA
Sbjct: 222 FSAKYDESRRKWGGGIMGGKTQALLAKRAKA 252
Score = 47.6 bits (108), Expect = 1e-06
Identities = 30/78 (38%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +2
Query: 2 FGTREKYRPETXXXXXXXXXXXXXXXXXXXD-EPPPKRPNTLRAGTNTVTKLVEKKKAQL 178
F KYRPET + K+P ++ G N V L+E KKA+L
Sbjct: 91 FKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKL 150
Query: 179 VVIAHDVDPI-LTCALPA 229
V+IA DVDPI L LPA
Sbjct: 151 VLIASDVDPIELVVFLPA 168
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 33.1 bits (72), Expect = 0.023
Identities = 22/68 (32%), Positives = 30/68 (44%)
Frame = +3
Query: 213 LVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTN 392
++ +P LC VPY K LG + K TS + V G + SKV E
Sbjct: 84 VISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMI-VPGGKKKDMSKVEE----- 137
Query: 393 FNERYEEL 416
+ E YEE+
Sbjct: 138 YKESYEEI 145
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 31.1 bits (67), Expect = 0.092
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 213 LVLFLPALCRKMGVPYCIVKGKSRLG-ALVHRKTCTSVALTNVESGD 350
++L LP LC VPY V K+ LG A + S ++T E+ D
Sbjct: 62 ILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASD 108
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 122 LRAGTNTVTKLVEKKKAQLVVIAHDVDPI 208
LR G N TK + + ++ +V+A D +PI
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPI 60
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 27.5 bits (58), Expect = 1.1
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -3
Query: 448 LPRTPPPQCLRNSS*RSLKLVLIASTTFEKAARSPDSTFVRATLVQVLRCTSAPNRDLPF 269
L RT PP L + SL + F + A SPD + T LR PN ++P+
Sbjct: 276 LERTEPPNSLNSKISYSLYCNETLVSFFRRPAFSPDGLLL-VTPAGRLRPHGQPNFEVPY 334
Query: 268 T 266
T
Sbjct: 335 T 335
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 389 QLQ*ALRRVTQTLGRWRPR*QVERAYRQAGE 481
Q++ L R+ Q +G + R ++ERA RQA E
Sbjct: 249 QIRFNLERICQDIGNFDVRSRIERAARQARE 279
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 2.6
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -3
Query: 433 PPQCLRNSS*RSLKLVLIASTTFEKAARSPDSTFVRATLVQVLRCTSAPNRDLPFT 266
P Q + +SS S V + S++ + S DST + +T + T P P T
Sbjct: 264 PTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPIT 319
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 24.6 bits (51), Expect = 8.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 363 SKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLE 479
+K+ EA K FNE E+L GGG L K+ A+L+
Sbjct: 23 AKINEA-KKRFNEHKEKLGAIRGGGSLQEKNAELRAELD 60
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.6 bits (51), Expect = 8.0
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 223 SCQR-FAVRWESRTVS*RVNHDWVRLYTVRL 312
SC++ F+ WES H WVRL RL
Sbjct: 2232 SCEKEFSKIWESMRYLILFKHAWVRLSVSRL 2262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,164
Number of Sequences: 5004
Number of extensions: 35017
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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