Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_F10
(486 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 125 2e-29
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 125 2e-29
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 84 7e-17
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 33 0.092
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 30 1.1
11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610 29 2.0
01_01_0437 - 3293624-3294029,3294094-3294212 29 2.0
05_03_0629 + 16376575-16376689,16376792-16376839,16376927-163770... 29 2.6
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745... 28 4.6
12_02_1094 + 26032135-26032164,26032975-26033152,26033234-260340... 27 6.0
08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110... 27 6.0
04_04_0620 + 26656072-26656417,26656585-26657396 27 6.0
02_04_0134 - 20109610-20109984 27 6.0
04_04_0619 + 26652923-26653267,26653440-26654273 27 8.0
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 125 bits (302), Expect = 2e-29
Identities = 53/90 (58%), Positives = 75/90 (83%)
Frame = +3
Query: 213 LVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTN 392
LV++LPALCRKM VPYCIVKGK+RLG++VH+KT + + LT V++ D+ FSK++EAIK N
Sbjct: 158 LVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKAN 217
Query: 393 FNERYEELRRHWGGGVLGNKSNARIAKLEK 482
FN++++E+R+ WGGGV+G+KS A+ EK
Sbjct: 218 FNDKFDEVRKKWGGGVMGSKSQAKTKAREK 247
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/42 (61%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +2
Query: 107 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPI-LTCALPA 229
K+P ++ G N VT L+E+ KAQLVVIAHDVDPI L LPA
Sbjct: 123 KKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPA 164
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 125 bits (301), Expect = 2e-29
Identities = 51/90 (56%), Positives = 76/90 (84%)
Frame = +3
Query: 213 LVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTN 392
LV++LPALCRKM +PYCIVKGK+RLG++VH+KT + + LT V++ D+ FSK++EAIK+N
Sbjct: 143 LVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKSN 202
Query: 393 FNERYEELRRHWGGGVLGNKSNARIAKLEK 482
FN++++E+R+ WGGG++G+KS A+ EK
Sbjct: 203 FNDKFDEVRKKWGGGIMGSKSQAKTKAREK 232
Score = 48.0 bits (109), Expect = 4e-06
Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +2
Query: 107 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPI-LTCALPA 229
K+P ++ G + VT L+E+ KAQLVVIAHDVDPI L LPA
Sbjct: 108 KKPIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPA 149
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 83.8 bits (198), Expect = 7e-17
Identities = 41/90 (45%), Positives = 61/90 (67%)
Frame = +3
Query: 213 LVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTN 392
LV++LPALCRKM +VH+KT + + LT V++ D+ FSK++EAIK N
Sbjct: 142 LVVWLPALCRKM--------------EIVHKKTASVLCLTTVKNEDKLEFSKILEAIKAN 187
Query: 393 FNERYEELRRHWGGGVLGNKSNARIAKLEK 482
FN++++E+R+ WGGGV+G+KS A+ EK
Sbjct: 188 FNDKFDEVRKKWGGGVMGSKSQAKTKAREK 217
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/42 (61%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +2
Query: 107 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPI-LTCALPA 229
K+P ++ G N VT L+E+ KAQLVVIAHDVDPI L LPA
Sbjct: 107 KKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPA 148
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 33.5 bits (73), Expect = 0.092
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +3
Query: 213 LVLFLPALCRKMGVPYCIVKGKSRL--GALVHRKTCTSVALTNVESGDRAAFSKVVEAIK 386
++ +P LC + +PY V K L R TC + LT G+ V E +K
Sbjct: 75 VITHVPILCEEANIPYVYVPSKEDLATAGTTKRPTCCVLVLTKPAKGELE--EDVKEKLK 132
Query: 387 TNFNERYEELRRHWGG 434
T++++ E+ G
Sbjct: 133 TDYDQVMSEVAEAGNG 148
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +3
Query: 213 LVLFLPALCRKMGVPYCIVKGKSRL--GALVHRKTCTSVALTNVESGDRAAFSKVVEAIK 386
++ +P LC + +PY V K L R TC + +T G+ +V E +K
Sbjct: 75 VITHVPILCEEANIPYIYVPSKEDLATAGTTKRPTCCVLVMTKPAKGE--INEEVKEKLK 132
Query: 387 TNFNERYEEL 416
++++ E+
Sbjct: 133 SDYDHVVAEV 142
>11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610
Length = 439
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/74 (24%), Positives = 29/74 (39%)
Frame = -3
Query: 472 LAIRAFDLLPRTPPPQCLRNSS*RSLKLVLIASTTFEKAARSPDSTFVRATLVQVLRCTS 293
L + A LL PP + + R ++ + R P+ + A +R T
Sbjct: 14 LLVAAASLLSLPPPSLAVTSPYVRPKPRATLSLLKDDDDGRKPEQVHISAVGSDKMRVTW 73
Query: 292 APNRDLPFTIQYGT 251
D P T++YGT
Sbjct: 74 ITGGDAPATVEYGT 87
>01_01_0437 - 3293624-3294029,3294094-3294212
Length = 174
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 98 PPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVD 202
PPP + R GT+++ + KA++ VI HD +
Sbjct: 34 PPPPQQQAARKGTHSLEGVKPLPKAEVSVICHDAN 68
>05_03_0629 +
16376575-16376689,16376792-16376839,16376927-16377012,
16377791-16377878,16378387-16378472,16378604-16378690,
16379111-16379293,16379387-16379470,16379590-16379651,
16379752-16379827,16379906-16379968,16380060-16380141,
16380840-16380916,16381502-16381549,16381681-16381743
Length = 415
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -3
Query: 484 AFSSLAIRAFDLLPRTPPPQCLRNSS*RSLKLVLIASTTFEKAARSPD 341
A SS R L R+PPP LR + R ++V A T E A +P+
Sbjct: 14 AASSATFRPPLLSLRSPPPSSLRLNRRRHFQVVRAAETDKETKANAPE 61
>03_05_0261 -
22470565-22470714,22472101-22474270,22474368-22474540,
22474763-22474924,22476420-22476560
Length = 931
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 402 RYEELRRHWGGGVLGNKSNARIAKLEK 482
R +EL WGG LGN ++K+EK
Sbjct: 854 REKELMDAWGGVGLGNSMKPHLSKIEK 880
>12_02_1094 +
26032135-26032164,26032975-26033152,26033234-26034017,
26034135-26034216,26034968-26035177
Length = 427
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 257 RDSHLTAKRWQEEHKLRLGLRHER 186
R+ A WQE HK +L LR +R
Sbjct: 311 REFEARAMAWQETHKCKLALRFQR 334
>08_01_0139 +
1105857-1107008,1107124-1107328,1107583-1107768,
1107924-1108133,1108552-1109186
Length = 795
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 240 RKMGVPYCIVKGKSRLGALVHRKTCTSV 323
R + P I+K +R+ A +H +TC+SV
Sbjct: 87 RLVNSPINIIKANARVKAALHNQTCSSV 114
>04_04_0620 + 26656072-26656417,26656585-26657396
Length = 385
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 95 EPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDP 205
+PP P + A + +VE KKAQ++ + H +DP
Sbjct: 344 QPPRPPPMSFVAEHPFMFAIVEYKKAQVLFLGHVMDP 380
>02_04_0134 - 20109610-20109984
Length = 124
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 52 ASKESRRSQGC*ER*AATEKAKHPTRWNQHCYQAC*EEEGTACGHRS*RRP 204
A+ + R Q C E+ AA + + RW + C C + + C RRP
Sbjct: 15 AASRAERRQACSEQGAAKQARRLERRWAKQC--GCRQPQSEWCVANQCRRP 63
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 95 EPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDP 205
E P RP + A + +VE +KAQ++ + H +DP
Sbjct: 352 ESPKPRPMSFVAEHPFMFAIVEYEKAQVLFLGHVMDP 388
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,531,446
Number of Sequences: 37544
Number of extensions: 275771
Number of successful extensions: 771
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -