Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_F10
(486 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 116 1e-26
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 116 1e-26
AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation... 31 0.34
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 31 0.59
Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF300704-1|AAG24400.1| 622|Caenorhabditis elegans incenp-like p... 27 9.5
AC025716-5|AAK39616.1| 622|Caenorhabditis elegans Incenp homolo... 27 9.5
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 116 bits (278), Expect = 1e-26
Identities = 50/91 (54%), Positives = 70/91 (76%)
Frame = +3
Query: 213 LVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTN 392
+VL LPALCRK VPY I+KGK+ LG +V RKT +VAL +V D++A +K+VE + N
Sbjct: 167 IVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNN 226
Query: 393 FNERYEELRRHWGGGVLGNKSNARIAKLEKA 485
F+ER+EE+R+HWGGGV+ KS+A+ K+E+A
Sbjct: 227 FSERHEEIRKHWGGGVMSAKSDAKKLKIERA 257
Score = 65.7 bits (153), Expect = 2e-11
Identities = 33/77 (42%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +2
Query: 2 FGTREKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQLV 181
F +KYRPE+ E KRPNT+R G NT+T+LVE ++AQLV
Sbjct: 97 FKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETRRAQLV 156
Query: 182 VIAHDVDPI-LTCALPA 229
+IAHDV+P+ + LPA
Sbjct: 157 LIAHDVNPLEIVLHLPA 173
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 116 bits (278), Expect = 1e-26
Identities = 50/91 (54%), Positives = 70/91 (76%)
Frame = +3
Query: 213 LVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTN 392
+VL LPALCRK VPY I+KGK+ LG +V RKT +VAL +V D++A +K+VE + N
Sbjct: 147 IVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNN 206
Query: 393 FNERYEELRRHWGGGVLGNKSNARIAKLEKA 485
F+ER+EE+R+HWGGGV+ KS+A+ K+E+A
Sbjct: 207 FSERHEEIRKHWGGGVMSAKSDAKKLKIERA 237
Score = 57.2 bits (132), Expect = 6e-09
Identities = 26/42 (61%), Positives = 35/42 (83%), Gaps = 1/42 (2%)
Frame = +2
Query: 107 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPI-LTCALPA 229
KRPNT+R G NT+T+LVE ++AQLV+IAHDV+P+ + LPA
Sbjct: 112 KRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPA 153
>AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation
defective protein 1 protein.
Length = 620
Score = 31.5 bits (68), Expect = 0.34
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -3
Query: 385 LIASTTFEKAARSPDSTFVRATLVQVLRCTSAPNRDLPFTIQYGTPI 245
L+ T E A +S D F V V TS+PN+D P T+Q+ P+
Sbjct: 361 LLVKTGLENAFKSTDCGFSPRAEV-VFTGTSSPNKDTPGTLQFFDPM 406
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 30.7 bits (66), Expect = 0.59
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 213 LVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTSVALTNVESGDRAAFSKVVEAIK 386
++L LP LC VPY V+ K+ LG V R + N S ++ K+ E ++
Sbjct: 65 ILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVE 124
>Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical
protein T20D3.8 protein.
Length = 282
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 306 YGVQAHPIVIYPSRYSTGLPS 244
YGV+A P+V YP+ STGL S
Sbjct: 155 YGVKA-PVVSYPTSVSTGLSS 174
>Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical
protein F20G4.1 protein.
Length = 1615
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +3
Query: 261 CIVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEA 380
C +KG + + +C ALT +GD + ++++E+
Sbjct: 566 CRIKGDVDIYMMARNGSCLDAALTFAHNGDIDSLTRIIES 605
>AF300704-1|AAG24400.1| 622|Caenorhabditis elegans incenp-like
protein ICP-1 protein.
Length = 622
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 279 IYPSRYSTGLPSYGKALAGRAQVKIGS 199
I+P+ ST P G A G+ ++ IGS
Sbjct: 311 IFPTAESTSTPGRGPAKKGKVEILIGS 337
>AC025716-5|AAK39616.1| 622|Caenorhabditis elegans Incenp homolog
protein 1 protein.
Length = 622
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 279 IYPSRYSTGLPSYGKALAGRAQVKIGS 199
I+P+ ST P G A G+ ++ IGS
Sbjct: 311 IFPTAESTSTPGRGPAKKGKVEILIGS 337
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,671,284
Number of Sequences: 27780
Number of extensions: 208642
Number of successful extensions: 477
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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