Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F09
         (194 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   1.8  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   1.8  
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    23   4.2  
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    23   5.6  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    23   5.6  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    23   7.4  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    23   7.4  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    22   9.7  

>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 31  LGIEKEKGNLDFGSDADFVILHPSSLKVF 117
           L +E  +  LD    +DF +  PSS K F
Sbjct: 208 LHVESARAGLDLLDQSDFSLTSPSSAKEF 236


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 81  VRITTKVKISFLFFDTQSFSWVDL 10
           V +T       LFFD Q  SW+ L
Sbjct: 307 VLLTLATHPDLLFFDVQKISWITL 330


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 80  SASLPKSRFPFSFSIPKALAGW 15
           + +LP   FPF   +  A+A W
Sbjct: 271 NGTLPSGSFPFWDEVASAIAAW 292


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 14  STQLKLWVSKKRKEILTLVV 73
           +T L+LW+ +K KE+   V+
Sbjct: 119 TTDLRLWLCRKIKEVEVYVI 138


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 97  PSSLKVFSTWIAGECVYNCNSD*YPSYYE 183
           PS++K F  +   + + NC S  Y  Y+E
Sbjct: 525 PSAIKEFIEYFLCDQLMNCLSVYYSKYFE 553


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 25  KALGIEKEKGNLDFGSDADFVILHPSSLKVFSTWIAGEC 141
           KAL  +  +  LD    A F     SS+ ++  W+ G C
Sbjct: 208 KALAKQILEQELDMIHQAVFTDPDDSSVWIYHRWLMGHC 246


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 91  VLQSPHHYQSQDFLSLFRYPKL*LGGPR 8
           V+++P   +  DF S +  P   +G P+
Sbjct: 328 VVENPESKKITDFFSFYSLPSTVIGNPK 355


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 92  SITKSASLPKSRFPFSFS 39
           S+T+  +  ++RFPF +S
Sbjct: 443 SVTRLLNFARARFPFEYS 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 756,326
Number of Sequences: 5004
Number of extensions: 11870
Number of successful extensions: 37
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)