Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F09
         (194 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1072 + 34295227-34295316,34295410-34295583,34296268-342963...    27   1.6  
11_06_0180 + 20962420-20962528,20962618-20962699,20962831-209629...    26   4.9  
01_06_0966 - 33453963-33456692                                         26   4.9  
11_03_0072 + 9605273-9606814,9616982-9617016,9617271-9617348,961...    25   6.4  
08_01_0788 + 7617929-7617969,7619848-7621622,7635250-7635437           25   6.4  
01_07_0201 + 41956938-41957022,41957123-41957214,41957460-419575...    25   6.4  

>01_06_1072 +
           34295227-34295316,34295410-34295583,34296268-34296322,
           34296410-34296679,34296881-34297092,34297276-34297396,
           34297674-34297761,34297834-34297912,34298092-34298179,
           34298312-34298352,34298477-34298529,34298623-34298779,
           34298862-34299053
          Length = 539

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 22  AKALGIEKEKGNLDFGSDADFVILHP 99
           AK   I   KG +  GSDAD +IL+P
Sbjct: 425 AKIFNIYPRKGAILEGSDADIIILNP 450


>11_06_0180 + 20962420-20962528,20962618-20962699,20962831-20962948,
            20963024-20963062,20963181-20963343,20963706-20963921,
            20964039-20964116,20964244-20964500,20964544-20964575,
            20964815-20965197,20965262-20965831,20966250-20966343,
            20966365-20966541,20966761-20966963,20968244-20968301,
            20969126-20969381,20969553-20969789
          Length = 1023

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 100  SSLKVFSTWIAGECVYNC 153
            SSLKV  TW+AG   Y C
Sbjct: 1000 SSLKVQFTWLAGAQSYEC 1017


>01_06_0966 - 33453963-33456692
          Length = 909

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 31  LGIEKEKGNLDFGSDADFVILHPSSLKVFSTWIAGE 138
           LG+ K    L+ G D D + +HP  ++  + WIA +
Sbjct: 446 LGVLKIACLLEKGDDEDHISMHP-MVRAMALWIASD 480


>11_03_0072 +
           9605273-9606814,9616982-9617016,9617271-9617348,
           9617427-9617501,9617583-9617657,9617731-9617977,
           9618070-9618313,9618852-9619309,9619388-9619675,
           9619751-9619788,9619882-9620452
          Length = 1216

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 43  KEKGNLDFGSDADFVILHPSSLKVFSTWIAGECVYN 150
           K+  N+ FG   D + L        STW    C+YN
Sbjct: 329 KDARNIRFGLSTDGMNLFGEMSSGHSTWPVTMCIYN 364


>08_01_0788 + 7617929-7617969,7619848-7621622,7635250-7635437
          Length = 667

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 43  KEKGNLDFGSDADFVILHPSSLKVFSTWIAGECVYN 150
           K+  N+ FG   D + L        STW    C+YN
Sbjct: 343 KDARNIRFGLSTDGMNLFGEMSSGHSTWPVTMCIYN 378


>01_07_0201 +
           41956938-41957022,41957123-41957214,41957460-41957561,
           41957691-41957763,41958297-41958403,41958476-41958599,
           41959004-41959198,41959515-41959600,41959695-41959802,
           41960171-41960266,41960347-41960445,41960562-41960636,
           41961040-41961171,41961252-41961367,41961935-41962109
          Length = 554

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 7   HEVHPAKALGIEKEKGNLDFGSDADFVILHPSSLKVFST 123
           H +  A A  ++   G+L  G  ADFVIL  +S   F +
Sbjct: 498 HTISAAYACFLDHVLGSLSEGKYADFVILPSTSWNEFGS 536


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,634,373
Number of Sequences: 37544
Number of extensions: 66486
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)