Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_F09
(194 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 0.44
M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee homeobox-... 20 3.1
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 20 3.1
M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee homeobox-... 19 4.1
M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee homeobox-... 19 4.1
M29493-1|AAA27728.1| 74|Apis mellifera protein ( Bee homeobox-... 19 5.4
M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee homeobox-... 19 5.4
EF032397-1|ABM97933.1| 200|Apis mellifera arginine kinase protein. 19 5.4
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 19 5.4
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 19 5.4
AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein. 19 5.4
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 19 7.1
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 19 7.1
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 19 7.1
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 19 7.1
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 19 7.1
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 19 7.1
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 19 7.1
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 19 7.1
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 19 7.1
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 19 7.1
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 19 7.1
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 19 7.1
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 18 9.4
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 18 9.4
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 18 9.4
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 18 9.4
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.6 bits (46), Expect = 0.44
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 79 DFVILHPSSLKVFSTWIAGECVYNCNSD*YPSYYEL 186
D+++ SS +S+++ +CN D P+ Y L
Sbjct: 947 DYIVDESSSSSFYSSFLYKSSESSCNPDQKPTEYLL 982
>M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H15. ).
Length = 74
Score = 19.8 bits (39), Expect = 3.1
Identities = 5/18 (27%), Positives = 10/18 (55%)
Frame = +2
Query: 5 CTRSTQLKLWVSKKRKEI 58
C Q+K+W +R ++
Sbjct: 46 CLTERQIKIWFQNRRMKL 63
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 19.8 bits (39), Expect = 3.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +1
Query: 136 ECVYNCNSD*YPSYYELHL 192
ECV+ N+ +YY HL
Sbjct: 39 ECVFCRNNGEEEAYYRKHL 57
>M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E30. ).
Length = 109
Score = 19.4 bits (38), Expect = 4.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +2
Query: 20 QLKLWVSKKRKEI 58
Q+K+W KR +I
Sbjct: 63 QIKIWFQNKRAKI 75
>M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E60. ).
Length = 109
Score = 19.4 bits (38), Expect = 4.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +2
Query: 20 QLKLWVSKKRKEI 58
Q+K+W KR +I
Sbjct: 63 QIKIWFQNKRAKI 75
>M29493-1|AAA27728.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H90. ).
Length = 74
Score = 19.0 bits (37), Expect = 5.4
Identities = 5/15 (33%), Positives = 8/15 (53%)
Frame = +2
Query: 5 CTRSTQLKLWVSKKR 49
C Q+K+W +R
Sbjct: 46 CLTERQIKIWFQNRR 60
>M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H55. ).
Length = 86
Score = 19.0 bits (37), Expect = 5.4
Identities = 5/15 (33%), Positives = 8/15 (53%)
Frame = +2
Query: 5 CTRSTQLKLWVSKKR 49
C Q+K+W +R
Sbjct: 46 CLTERQIKIWFQNRR 60
>EF032397-1|ABM97933.1| 200|Apis mellifera arginine kinase protein.
Length = 200
Score = 19.0 bits (37), Expect = 5.4
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +1
Query: 16 HPAKALGIEKEKGNLD 63
HP K G GNLD
Sbjct: 82 HPPKDFGDVDSLGNLD 97
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 19.0 bits (37), Expect = 5.4
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -2
Query: 181 HNMMDINHYYNYKRI 137
+N + N+Y NYK++
Sbjct: 338 YNNYNNNNYNNYKKL 352
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 19.0 bits (37), Expect = 5.4
Identities = 5/15 (33%), Positives = 8/15 (53%)
Frame = +2
Query: 5 CTRSTQLKLWVSKKR 49
C Q+K+W +R
Sbjct: 308 CLTERQIKIWFQNRR 322
>AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein.
Length = 355
Score = 19.0 bits (37), Expect = 5.4
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +1
Query: 16 HPAKALGIEKEKGNLD 63
HP K G GNLD
Sbjct: 98 HPPKDFGDVDSLGNLD 113
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 18.6 bits (36), Expect = 7.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1
Query: 97 PSSLKVFSTWIAGECVY 147
PS+L++FST + Y
Sbjct: 403 PSALEIFSTSMKDPAFY 419
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 18.6 bits (36), Expect = 7.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1
Query: 97 PSSLKVFSTWIAGECVY 147
PS+L++FST + Y
Sbjct: 403 PSALEIFSTSMKDPAFY 419
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 18.6 bits (36), Expect = 7.1
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -2
Query: 181 HNMMDINHYYNYKRI 137
+N + N+Y NYK++
Sbjct: 95 NNYNNNNNYNNYKKL 109
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 18.6 bits (36), Expect = 7.1
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -2
Query: 181 HNMMDINHYYNYKRI 137
+N + N+Y NYK++
Sbjct: 95 NNYNNNNNYNNYKKL 109
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 18.6 bits (36), Expect = 7.1
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -2
Query: 181 HNMMDINHYYNYKRI 137
+N + N+Y NYK++
Sbjct: 95 NNYNNNNNYNNYKKL 109
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 18.6 bits (36), Expect = 7.1
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -2
Query: 181 HNMMDINHYYNYKRI 137
+N + N+Y NYK++
Sbjct: 95 NNYNNNNNYNNYKKL 109
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 18.6 bits (36), Expect = 7.1
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -2
Query: 181 HNMMDINHYYNYKRI 137
+N + N+Y NYK++
Sbjct: 95 NNYNNNNNYNNYKKL 109
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 18.6 bits (36), Expect = 7.1
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -2
Query: 181 HNMMDINHYYNYKRI 137
+N + N+Y NYK++
Sbjct: 95 NNYNNNNNYNNYKKL 109
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 18.6 bits (36), Expect = 7.1
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -2
Query: 181 HNMMDINHYYNYKRI 137
+N + N+Y NYK++
Sbjct: 95 NNYNNNNNYNNYKKL 109
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 18.6 bits (36), Expect = 7.1
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -2
Query: 181 HNMMDINHYYNYKRI 137
+N + N+Y NYK++
Sbjct: 95 NNYNNNNNYNNYKKL 109
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 18.6 bits (36), Expect = 7.1
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -2
Query: 181 HNMMDINHYYNYKRI 137
+N + N+Y NYK++
Sbjct: 93 NNNYNNNNYNNYKKL 107
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 18.6 bits (36), Expect = 7.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 80 SASLPKSRFPFSFSIPKA 27
S +LPK+ PF ++ A
Sbjct: 1069 SLALPKNEGPFRLNVETA 1086
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 18.2 bits (35), Expect = 9.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1
Query: 97 PSSLKVFSTWIA 132
PS+L V +WIA
Sbjct: 223 PSALIVVMSWIA 234
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 18.2 bits (35), Expect = 9.4
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = +1
Query: 94 HPSSLKVFSTWIAGECVYNCNSD*YP 171
H + ++ IAG V + +D YP
Sbjct: 306 HWTVMRCVQAMIAGIVVISAGADAYP 331
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 18.2 bits (35), Expect = 9.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -2
Query: 184 IHNMMDINHYYNYK 143
IHN + N+Y N K
Sbjct: 312 IHNNNNYNNYNNKK 325
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 18.2 bits (35), Expect = 9.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 1 VLHEVHPAKALGIEKEKGNLD 63
V H V+ KAL + +K N+D
Sbjct: 235 VSHVVNHEKALREQAKKMNVD 255
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,173
Number of Sequences: 438
Number of extensions: 887
Number of successful extensions: 27
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used: 2541420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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