Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F07
         (191 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=...    32   2.8  
UniRef50_Q64PA0 Cluster: Putative outer membrane protein probabl...    31   3.7  
UniRef50_Q296L0 Cluster: GA13194-PA; n=1; Drosophila pseudoobscu...    31   5.0  
UniRef50_A0KY51 Cluster: Dipeptidase, putative; n=12; Shewanella...    31   6.5  
UniRef50_Q65VF0 Cluster: AcrR protein; n=2; Pasteurellaceae|Rep:...    30   8.7  

>UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=6;
           Papilionoideae|Rep: Reverse transcriptase family member
           - Glycine max (Soybean)
          Length = 377

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = -2

Query: 79  IPVCSEFRYLGSLLQCDGEIDREI 8
           IP  + F+YLGS++Q DGEI+ ++
Sbjct: 183 IPQVTRFKYLGSVIQDDGEIEGDV 206


>UniRef50_Q64PA0 Cluster: Putative outer membrane protein probably
            involved in nutrient binding; n=2; Bacteroides
            fragilis|Rep: Putative outer membrane protein probably
            involved in nutrient binding - Bacteroides fragilis
          Length = 1098

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 36   CKSDPR*RNSEQTGIGVSSE*YWLQTGDTAKVKYKFYEI 152
            C+++   RN+  T   V++   W QTGD A  KY  Y++
Sbjct: 953  CRANANARNAIITTTDVTNGNIWWQTGDAATAKYPRYDV 991


>UniRef50_Q296L0 Cluster: GA13194-PA; n=1; Drosophila
           pseudoobscura|Rep: GA13194-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 1192

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = -1

Query: 137 IFNFGGISSLKPISFGGXTNTS 72
           +F+FGG++S  P SFGG T+T+
Sbjct: 849 LFSFGGVTSGAPPSFGGATSTN 870


>UniRef50_A0KY51 Cluster: Dipeptidase, putative; n=12;
           Shewanella|Rep: Dipeptidase, putative - Shewanella sp.
           (strain ANA-3)
          Length = 533

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -1

Query: 131 NFGGISSLKPISFGGXTNTSLF 66
           +F GI+S KP++ GG TN+ LF
Sbjct: 465 HFTGIASPKPVAIGGSTNSKLF 486


>UniRef50_Q65VF0 Cluster: AcrR protein; n=2; Pasteurellaceae|Rep:
           AcrR protein - Mannheimia succiniciproducens (strain
           MBEL55E)
          Length = 188

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 150 FRKIYI*LWRYLQSEANIIRRXHQYQSV 67
           ++K+++ +W +LQ   NI+    QYQS+
Sbjct: 84  YKKMWLNVWYFLQDNPNIVMNMQQYQSL 111


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,284,708
Number of Sequences: 1657284
Number of extensions: 2749852
Number of successful extensions: 6317
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6317
length of database: 575,637,011
effective HSP length: 43
effective length of database: 504,373,799
effective search space used: 10087475980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)