Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F07
         (191 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    24   3.2  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    24   3.2  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    23   4.2  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    23   4.2  
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    23   5.6  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    23   7.4  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    22   9.8  
SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces po...    22   9.8  

>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 64  QNRLVLVXPPNDIGFRLEIPPKLN 135
           Q RLV    PND  F    PP+L+
Sbjct: 278 QTRLVRTTVPNDSFFNFFSPPQLD 301


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 60  NSEQTGIGVSSE*YWLQTGDTAKVKYKFYEICFLTN 167
           NSE   I + S  + +  GD   V YK   I F+TN
Sbjct: 395 NSEDGEIYIRSITHAIMIGDHVMVMYKGPVITFITN 430


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 106 SQYHSEXTPIPVCSEFRYLGSLLQCDGEIDREILV 2
           S  H+  +P+P+   F Y+ S    D   D E  V
Sbjct: 144 SDDHNSQSPVPLNEGFEYIASSGSEDKNSDEEFAV 178


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -3

Query: 147 RKIYI*LWRYLQS 109
           R++++ +WRYLQS
Sbjct: 349 RRLFLCIWRYLQS 361


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 146 VKFIFNFGGISS 111
           V+FI+N+GGI S
Sbjct: 253 VRFIYNYGGIPS 264


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 131  NFGGISSLKPISFGGXTNTS 72
            N  G +   P  FGG TNT+
Sbjct: 1027 NQSGTNPAAPAGFGGITNTA 1046


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -2

Query: 106 SQY--HSEXTPIPVCSEFRYLGSLL 38
           SQY   SE +PIP    F+++ S L
Sbjct: 400 SQYLPPSETSPIPKTPNFKFISSTL 424


>SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 176 NYIICKKTYFVKF 138
           NY +CKK  F KF
Sbjct: 80  NYALCKKLIFDKF 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 778,915
Number of Sequences: 5004
Number of extensions: 12051
Number of successful extensions: 26
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)