Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F07
         (191 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0175 - 1371089-1371706,1371812-1371994,1372069-1372324,137...    27   1.6  
01_04_0068 + 15693131-15693533,15693604-15693803,15693879-156941...    27   2.1  
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136...    25   6.4  
11_06_0201 + 21178784-21179047,21179519-21180064                       25   8.5  

>06_01_0175 -
           1371089-1371706,1371812-1371994,1372069-1372324,
           1372407-1372976,1373423-1373529,1373664-1374136,
           1374279-1374372
          Length = 766

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 64  QNRLVLVXPPNDIGFRLEIPPKLNINFTKYVFL 162
           QN ++L+  P  IG   ++PP   +N+T ++ +
Sbjct: 655 QNWILLIKTPVLIGATFQMPPATAVNYTTWILV 687


>01_04_0068 +
           15693131-15693533,15693604-15693803,15693879-15694162,
           15694251-15694428
          Length = 354

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 57  ATSGHSCSVTEKSTAKSSC 1
           ATSG SC+++  S+A SSC
Sbjct: 65  ATSGVSCTISSGSSATSSC 83


>06_01_0173 -
           1364219-1364836,1364941-1365123,1365215-1365470,
           1365551-1366120,1367066-1367178,1367344-1367816,
           1367906-1367984
          Length = 763

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 64  QNRLVLVXPPNDIGFRLEIPPKLNINFTKYVFL 162
           QN ++L+  P  IG   ++PP   +N+T ++ +
Sbjct: 652 QNWILLINMPVLIGATGQMPPATAVNYTTWILV 684


>11_06_0201 + 21178784-21179047,21179519-21180064
          Length = 269

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 50  EVAEFRTDWYWCXLRMILASDWRYR 124
           E+ E    W+W    ++ AS WR R
Sbjct: 220 ELRELLARWWWREKMILTASSWRRR 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,896,115
Number of Sequences: 37544
Number of extensions: 74611
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)