Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_F06
(250 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa... 74 2e-15
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc... 74 2e-15
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 1.9
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 24 3.4
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 24 3.4
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 24 3.4
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 23 4.5
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 23 4.5
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 23 5.9
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 23 5.9
>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
S28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 68
Score = 74.1 bits (174), Expect = 2e-15
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = +1
Query: 52 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 198
P LA+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
S28|Schizosaccharomyces pombe|chr 3|||Manual
Length = 68
Score = 74.1 bits (174), Expect = 2e-15
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = +1
Query: 52 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 198
P LA+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 24.6 bits (51), Expect = 1.9
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -2
Query: 243 PLSKSPGFTLRLEKGQ--DVSVADRSLHVPDDLTASLSDELHFDLSTLSL*SGAAEHFHD 70
P+S PG + ++ + + D S+ ++LTAS +E H++L T + +
Sbjct: 391 PVSSQPGSDAKSQEFDFFEAKIPD-SIAKLNELTAS--NENHYELKTYDRAERLRQKIQE 447
Query: 69 TSKNVRLI 46
S N RLI
Sbjct: 448 VSSNKRLI 455
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 23.8 bits (49), Expect = 3.4
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 222 FTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLSTLSL*SGAAEH 79
FT+ L + ++V D S+ PD + + D FD S +S S EH
Sbjct: 33 FTISLLLERAIAVHDPSIISPDQIAEKIED-CGFDASVIS--STEGEH 77
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 23.8 bits (49), Expect = 3.4
Identities = 8/36 (22%), Positives = 21/36 (58%)
Frame = +1
Query: 43 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSR 150
+D+P + ++V+ + T + CT+VK+ + ++
Sbjct: 123 LDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNK 158
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 23.8 bits (49), Expect = 3.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 249 IGPLSKSPGFTLRLEKGQDVSVADRSL 169
+ P+S P ++ L+ DVS AD S+
Sbjct: 168 LSPVSTFPASSISLDASSDVSAADVSV 194
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 23.4 bits (48), Expect = 4.5
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 136 R*TPL*PEYTVPVI-RCGRALSRHEQER*AYPF*IIYRAS 20
R TP +Y +I RC +L R+ Q + YP + R+S
Sbjct: 77 RFTPASDKYDYLLIDRCTVSLKRYRQRKSVYPMLMFLRSS 116
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 23.4 bits (48), Expect = 4.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 98 DPVRPSTFTTRARTLGLSILNYISSF 21
DP+ P T+ + ++ G I I+SF
Sbjct: 560 DPLPPDTYLSESQVFGRDISRRIASF 585
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 23.0 bits (47), Expect = 5.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 231 SPGFTLRLEKGQDVSVADRSLHVPDDLTASLSD 133
+P + LE VS+ + SL D+L SLSD
Sbjct: 316 APSNWIALEALPLVSIPNESLDESDELAESLSD 348
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 23.0 bits (47), Expect = 5.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -2
Query: 75 HDTSKNVRLIHFELYIELREIL 10
+D +VRL+ F++ + L E+L
Sbjct: 215 NDDQDSVRLLSFDIMVSLAEVL 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 992,131
Number of Sequences: 5004
Number of extensions: 16461
Number of successful extensions: 53
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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