Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_F06
(250 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 60 2e-10
03_01_0468 - 3612079-3612197,3612679-3612850 39 5e-04
09_02_0133 + 4707944-4708308,4708320-4708534,4708626-4708672,470... 26 4.8
07_03_0160 + 14556622-14556924 25 6.4
12_02_0399 - 18600444-18600591,18600626-18601656 25 8.5
12_01_0628 - 5181814-5182344 25 8.5
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 25 8.5
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309... 25 8.5
01_06_1354 - 36599904-36600643,36600851-36601352 25 8.5
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 60.1 bits (139), Expect = 2e-10
Identities = 28/59 (47%), Positives = 39/59 (66%)
Frame = -2
Query: 237 SKSPGFTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLSTLSL*SGAAEHFHDTSK 61
++ PG LRLE+G+DV++ DR+L VP D T + +ELH DL L+ +GAA H H K
Sbjct: 605 AQPPGLPLRLEQGEDVALTDRALDVPHDETVLVVEELHSDLGHLTPGAGAAHHLHHDGK 663
>03_01_0468 - 3612079-3612197,3612679-3612850
Length = 96
Score = 39.1 bits (87), Expect = 5e-04
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = -2
Query: 237 SKSPGFTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLSTLS 103
+K PG L LE+G+DV++++R+L VP D T + EL L L+
Sbjct: 10 AKPPGLPLGLEQGEDVALSNRALDVPHDETVLVIQELDSHLGHLT 54
>09_02_0133 +
4707944-4708308,4708320-4708534,4708626-4708672,
4708997-4709393,4710042-4710608,4710708-4710838,
4711274-4711747
Length = 731
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -2
Query: 222 FTLRLEKGQDVSVADRSLHVPDDLTASLSD 133
+ LR+ G + ++AD + +PD++ SD
Sbjct: 602 YLLRIGNGTENTIADDDVRLPDEIVIGYSD 631
>07_03_0160 + 14556622-14556924
Length = 100
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 226 WLHAPTREGSGCLRRGQVPSRS 161
WLH PT GC R G S +
Sbjct: 18 WLHCPTGLSPGCSRSGLAHSEA 39
>12_02_0399 - 18600444-18600591,18600626-18601656
Length = 392
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -2
Query: 204 KGQDVSVADRSLHVPDDLTASLSDELHFDLSTLSL*SGAAEHFHDTSKNVRL 49
+G+D ++ D+ ++PDD T L +S + + G H+ SK V++
Sbjct: 167 EGEDTTLWDKETNIPDDWTTIL-------MSRMKVKDGLDAHWRFDSKQVQV 211
>12_01_0628 - 5181814-5182344
Length = 176
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 232 VSWLHAPTREGSGCLRRGQVP 170
+SWL +GSGC +G +P
Sbjct: 17 LSWLDLAVAQGSGCPAQGVLP 37
>09_01_0102 +
1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 63 CSCRESARPHRITGTVYSGQSGVHRRD 143
CS E+ P ++ V++G+ HR+D
Sbjct: 118 CSDGEAGAPVKLMDVVFTGRKVAHRKD 144
>03_04_0151 -
17729023-17729372,17729441-17730623,17730723-17730953,
17730975-17731036,17732085-17732157,17737044-17737834,
17737932-17738004
Length = 920
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 195 DVSVADRSLHVPDDLTASLSD--ELHFDLSTLSL*SGAAEHFHD 70
+V V+D H + L S EL +D +S+ SG++ +H+
Sbjct: 415 EVDVSDNDSHTAEMLGDSHDGNAELFYDFDDISIDSGSSSKYHE 458
>01_06_1354 - 36599904-36600643,36600851-36601352
Length = 413
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 26 SIYNSKWISLTFLLVS*KCSAAPDHRDSVLRSKWSSSER 142
+I+ +KW ++ LLV +A +H +S LR + + R
Sbjct: 179 AIHGNKWAAIAKLLVGRTDNAIKNHWNSTLRRRHCTGGR 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,744,460
Number of Sequences: 37544
Number of extensions: 120230
Number of successful extensions: 296
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -