Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F06
         (250 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    81   1e-16
U21321-5|AAL11111.1|  553|Caenorhabditis elegans Hypothetical pr...    27   1.3  
U21321-4|AAG00049.1|  587|Caenorhabditis elegans Hypothetical pr...    27   1.3  
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ...    27   1.3  
Z81097-20|CAB03178.1|  417|Caenorhabditis elegans Hypothetical p...    27   2.3  
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    27   2.3  
AL023833-1|CAA19477.1|  417|Caenorhabditis elegans Hypothetical ...    27   2.3  
AF116530-1|AAD05571.1|  417|Caenorhabditis elegans synthetic mul...    27   2.3  
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U55854-1|AAA98010.2|  418|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    25   9.4  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 80.6 bits (190), Expect = 1e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
 Frame = +1

Query: 43  MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIG-ETSRQIIRNVKGPVRDGDILT 201
           MDK   LARV KV+GRTGSQGQCTQV+VEFI  + +R IIRNVKGPVR+GDILT
Sbjct: 1   MDKLT-LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53


>U21321-5|AAL11111.1|  553|Caenorhabditis elegans Hypothetical
           protein ZK177.8b protein.
          Length = 553

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 1   FRHEDFSKLDI*FKMDKPNVLARVVKVLGRTGSQ 102
           F+HED S L I   M+KP + +    +LG T  +
Sbjct: 123 FKHEDMSILIIKKIMNKPEIKSEFACILGETDEE 156


>U21321-4|AAG00049.1|  587|Caenorhabditis elegans Hypothetical
           protein ZK177.8a protein.
          Length = 587

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 1   FRHEDFSKLDI*FKMDKPNVLARVVKVLGRTGSQ 102
           F+HED S L I   M+KP + +    +LG T  +
Sbjct: 157 FKHEDMSILIIKKIMNKPEIKSEFACILGETDEE 190


>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
            protein Y81G3A.3 protein.
          Length = 1696

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 222  FTLRLEKGQDVSVADRSLHVPDDLTASLSDELH 124
            FTL++   Q +    R L + DD+ A L D LH
Sbjct: 1195 FTLKIGHAQLIEAQIRHLKLSDDVRAELLDALH 1227


>Z81097-20|CAB03178.1|  417|Caenorhabditis elegans Hypothetical
           protein K07A1.12 protein.
          Length = 417

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 77  KCSAAPDHRDSVLRSKWSSSERLAVRSSGT*RDLSATETS*PFSSRSVKPGDFDKGP 247
           K  +   HRD + + +WS      + SSGT + L   + S     +S +  D + GP
Sbjct: 301 KLHSFESHRDEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGEDQSAE--DAEDGP 355


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 115 QVKVEFIGETSRQIIRNVKGP-VRD 186
           Q+ +E++G    Q+IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291


>AL023833-1|CAA19477.1|  417|Caenorhabditis elegans Hypothetical
           protein K07A1.12 protein.
          Length = 417

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 77  KCSAAPDHRDSVLRSKWSSSERLAVRSSGT*RDLSATETS*PFSSRSVKPGDFDKGP 247
           K  +   HRD + + +WS      + SSGT + L   + S     +S +  D + GP
Sbjct: 301 KLHSFESHRDEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGEDQSAE--DAEDGP 355


>AF116530-1|AAD05571.1|  417|Caenorhabditis elegans synthetic
           multivulva protein LIN-53 p48 protein.
          Length = 417

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 77  KCSAAPDHRDSVLRSKWSSSERLAVRSSGT*RDLSATETS*PFSSRSVKPGDFDKGP 247
           K  +   HRD + + +WS      + SSGT + L   + S     +S +  D + GP
Sbjct: 301 KLHSFESHRDEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGEDQSAE--DAEDGP 355


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 113 VHCPCDPV-RPSTFTTRARTLGLSILNYISSFEKS 12
           VH P   +  P+ +TTRA  +   ++NY + F KS
Sbjct: 174 VHRPIPTIGNPNIYTTRASLINKVLINY-NEFTKS 207


>U55854-1|AAA98010.2|  418|Caenorhabditis elegans Hypothetical
           protein C04G6.4 protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 52  PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 201
           P+V A  V  L     + +    K+E   ET++  + NVK P +   + T
Sbjct: 86  PDVPAVTVGALSAPADKSETEGEKIEKPSETAQAHVENVKKPEKPSSLGT 135


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 113 VHCPCDPV-RPSTFTTRARTLGLSILNYISSFEKS 12
           VH P   +  P+ +TTRA  +   ++NY + F KS
Sbjct: 184 VHRPIPTIGNPNIYTTRASLINKVLINY-NEFTKS 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,559,462
Number of Sequences: 27780
Number of extensions: 95445
Number of successful extensions: 254
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)