Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F06
         (250 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   1.7  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    19   7.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    19   7.1  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    19   7.1  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    19   7.1  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    19   7.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    19   7.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      19   7.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   9.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    19   9.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 156  HQEREGTCPRRRHPDPSRVGA 218
            ++E     P RR P P R+G+
Sbjct: 1689 YEELNHCAPNRRCPPPPRMGS 1709


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 120 QSGVHRRD*PSDHQEREGTCPRRRH 194
           +S  H     S H  RE +C R R+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCSRDRN 242


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 120 QSGVHRRD*PSDHQEREGTCPRRRH 194
           +S  H     S H  RE +C R R+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCSRDRN 242


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 120 QSGVHRRD*PSDHQEREGTCPRRRH 194
           +S  H     S H  RE +C R R+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCSRDRN 242


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 120 QSGVHRRD*PSDHQEREGTCPRRRH 194
           +S  H     S H  RE +C R R+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCSRDRN 242


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 120 QSGVHRRD*PSDHQEREGTCPRRRH 194
           +S  H     S H  RE +C R R+
Sbjct: 207 RSRTHGFQHTSSHYSRERSCSRDRN 231


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 120 QSGVHRRD*PSDHQEREGTCPRRRH 194
           +S  H     S H  RE +C R R+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCSRDRN 242


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 90  HRITGTVYSGQSGVHRR 140
           H +   +Y G+  VH+R
Sbjct: 82  HALVEFIYHGEVNVHQR 98


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -2

Query: 225  GFTLRLEKGQDVSVADRSLHVPDDLTASL 139
            GF    E    +S  D +LHV   L  SL
Sbjct: 981  GFVTPFEHRHFISGIDSNLHVYAPLKISL 1009


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 6/19 (31%), Positives = 9/19 (47%)
 Frame = -1

Query: 235 EVSWLHAPTREGSGCLRRG 179
           ++ W +  T E   CL  G
Sbjct: 121 DLDWKYYTTNESHACLSTG 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,013
Number of Sequences: 438
Number of extensions: 1125
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)