Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_F05
(175 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi... 27 0.25
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 24 2.3
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 24 2.3
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 24 3.1
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c... 24 3.1
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 23 4.1
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 23 4.1
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 23 4.1
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 23 5.4
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 22 9.4
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 22 9.4
>SPBC18E5.05c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 27.5 bits (58), Expect = 0.25
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = -1
Query: 157 KEHFVWCSSVNENHHYSTSCN---FNIVAFLEVLCLLG--HRDPYLEELPSYQPRAE 2
K+H V ++N + S S F V L +C L H+D LE PSY P E
Sbjct: 91 KQHIVMIDTINPILNTSISSFTMFFGSVLALGSICFLTSFHKDVTLENYPSYLPPCE 147
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 24.2 bits (50), Expect = 2.3
Identities = 8/26 (30%), Positives = 11/26 (42%)
Frame = -1
Query: 175 NTNKSHKEHFVWCSSVNENHHYSTSC 98
N + SH + WC N+H C
Sbjct: 426 NDSDSHDDEETWCEVCETNNHSLQEC 451
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 24.2 bits (50), Expect = 2.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 151 HFVWCSSVNENHHYSTSCNFNIVAFLEVLCL 59
+ +W S+ + YS FN+ A + LCL
Sbjct: 93 YVIWTSNGFGSIEYSVMAQFNVSAQVATLCL 123
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 88 IVAFLEVLCLLGHRDPYLEELPS 20
+VAF +L GH P+L +PS
Sbjct: 585 VVAFFALLLEQGHHGPHLVVVPS 607
>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 148 FVWCSSVNENHHYSTS 101
+VW S NEN H S S
Sbjct: 233 YVWVSKHNENQHSSVS 248
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +2
Query: 11 RLV*WELLQVWVAVAQEAEDLQEC 82
+ V W L+ W +E ED EC
Sbjct: 420 KTVGWSLVDQWDQKLEEKEDATEC 443
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +3
Query: 66 RTSRNATILKLHDVE*WWFSLTELHQTKCSLCDL 167
R S++ + KL WW S T LC L
Sbjct: 80 RGSQSECVSKLESTSTWWLSFTSHFHDVNHLCRL 113
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 23.4 bits (48), Expect = 4.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 47 AVAQEAEDLQECDDIKVA*CGIMVVFINRATPNKVFL 157
A+ E ++ KVA G+ V F+N TPNK +L
Sbjct: 253 AIINEDAFIKAIKSGKVARAGLDV-FLNEPTPNKFWL 288
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 29 LLQVWVAVAQEAEDLQECDDIK 94
LLQ A+E ED E DD K
Sbjct: 2126 LLQSHPTQAEEEEDTNEADDFK 2147
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 22.2 bits (45), Expect = 9.4
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 109 STSCNFNIVAFLEVLCLLGHRDPYLEELPSYQPRAE 2
S C+ LEV G + P+L EL S + E
Sbjct: 886 SEDCDLQKKKLLEVSSKQGSQAPFLNELESEYEKLE 921
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1
Query: 130 VNENHHYSTSCNFNIVA 80
+N+NH YS N I A
Sbjct: 1509 INDNHEYSKMLNLGIEA 1525
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 652,748
Number of Sequences: 5004
Number of extensions: 9335
Number of successful extensions: 24
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 38
effective length of database: 2,172,326
effective search space used: 41274194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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