Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F05
         (175 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0965 + 21915842-21916906                                         26   3.7  
08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130...    25   6.5  

>10_08_0965 + 21915842-21916906
          Length = 354

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +3

Query: 3   SARGWYDGSSSRYGSRWPRRQRTSR--NATILKLHDVE*WW 119
           S   W +  SSR+ SRW   + +SR    T+      E WW
Sbjct: 281 SQERWSNRWSSRWSSRWSSGRWSSRYDAGTVTAAATAEWWW 321


>08_01_0162 -
           1302497-1302787,1304608-1305271,1305380-1306927,
           1307360-1308768
          Length = 1303

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 12  GWYDGSSSRYGSRWPRRQRTSRNA 83
           GW D S++RYG R   + R S +A
Sbjct: 59  GWIDISANRYGHRGHSKGRASYSA 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,351,536
Number of Sequences: 37544
Number of extensions: 59976
Number of successful extensions: 184
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 14,793,348
effective HSP length: 37
effective length of database: 13,404,220
effective search space used: 268084400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)