Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F05
         (175 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81462-4|CAE17685.2|   71|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z74041-5|CAA98516.2|  354|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z47075-4|CAE17757.1|  129|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z70781-6|CAA94831.2|  349|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>Z81462-4|CAE17685.2|   71|Caenorhabditis elegans Hypothetical
           protein C04H5.8 protein.
          Length = 71

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 100 CNFNIVAFLEVLCLLGHRDPYLEELPSYQPR 8
           C   +V  L VLCL     P L ELPS   R
Sbjct: 6   CKILVVLCLSVLCLTVSAAPGLFELPSRSVR 36


>Z74041-5|CAA98516.2|  354|Caenorhabditis elegans Hypothetical
           protein T03F7.2 protein.
          Length = 354

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 151 HFVWCSSVNENHHYSTSCNFNIVAFLEVLCLLGHRDPYLE 32
           H V+  S+N     +  C  +IVA +++L   GH   YL+
Sbjct: 200 HSVFVLSLNHTPIITYLCALSIVAVVQILFFGGHSLTYLK 239


>Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical
           protein F11A10.8 protein.
          Length = 302

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -1

Query: 145 VWCSSVNENHHYSTSCNFNIVAFLEVLCLLGHRDPYLEE 29
           V C    E  HY+  C+   +AFL     L H     +E
Sbjct: 250 VTCYKCGEKGHYANRCHKGALAFLSNTAHLAHEQREKDE 288


>Z47075-4|CAE17757.1|  129|Caenorhabditis elegans Hypothetical
           protein E02H1.8 protein.
          Length = 129

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 27  SSSRYGSRWPRRQRTSRNATILKLHDVE*WWFSLTELHQTKCSL 158
           S  RYG RW   +R +     L L  V+    SL  LH    S+
Sbjct: 6   SKIRYGVRWNPAERLALATRALNLQKVKSIDISLDPLHHDNLSI 49


>Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical
           protein Y6G8.4 protein.
          Length = 328

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 148 FVWCSSVNENHHYSTSCNFNIVAFLEVLC 62
           ++WC     N H     NFNI  FL+VLC
Sbjct: 287 YLWC-----NRH-CLFINFNIKTFLKVLC 309


>Z70781-6|CAA94831.2|  349|Caenorhabditis elegans Hypothetical
           protein F57A8.2a protein.
          Length = 349

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 27  SSSRYGSRWPRRQRTSRNATILKLHDVE*WWFSLTELHQT 146
           SS  YGS   R+++    A ++    +  WW + T++  T
Sbjct: 293 SSGSYGSEEGRKRKLILVAFVVITQPLIMWWLTSTQIQST 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,703,487
Number of Sequences: 27780
Number of extensions: 53072
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 12,740,198
effective HSP length: 38
effective length of database: 11,684,558
effective search space used: 222006602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)