Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_F02
(315 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 132 1e-32
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 132 1e-32
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 119 1e-28
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 116 6e-28
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 90 8e-20
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 64 5e-12
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 51 5e-08
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 33 0.010
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 25 2.7
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 25 3.6
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 6.3
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc... 23 8.3
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 23 8.3
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 23 8.3
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 23 8.3
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 132 bits (319), Expect = 1e-32
Identities = 61/70 (87%), Positives = 67/70 (95%)
Frame = +2
Query: 104 AVGIDLGTTYSCVGVFRHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKSQVAMNPNN 283
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAK+QVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 284 TIFDAKRLIG 313
TIFDAKRLIG
Sbjct: 64 TIFDAKRLIG 73
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 132 bits (319), Expect = 1e-32
Identities = 61/70 (87%), Positives = 67/70 (95%)
Frame = +2
Query: 104 AVGIDLGTTYSCVGVFRHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKSQVAMNPNN 283
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAK+QVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 284 TIFDAKRLIG 313
TIFDAKRLIG
Sbjct: 64 TIFDAKRLIG 73
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 119 bits (286), Expect = 1e-28
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2
Query: 104 AVGIDLGTTYSCVGVFRHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKSQVAMNPNN 283
A+GIDLGTTYSCV V+ VEII NDQG RTTPS+VAFT+TERL+GDAAK+Q AMNP N
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 284 TIFDAKRLIG 313
T+FDAKRLIG
Sbjct: 68 TVFDAKRLIG 77
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 116 bits (280), Expect = 6e-28
Identities = 52/69 (75%), Positives = 60/69 (86%)
Frame = +2
Query: 107 VGIDLGTTYSCVGVFRHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKSQVAMNPNNT 286
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAK+Q NP NT
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 287 IFDAKRLIG 313
IFD KRLIG
Sbjct: 98 IFDIKRLIG 106
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 89.8 bits (213), Expect = 8e-20
Identities = 43/78 (55%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Frame = +2
Query: 83 NKMAKAPAVGIDLGTTYSCVGVFRHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKS 259
N+ K P +GIDLGTT SC+ + ++IAN +G RTTPS VAFT D ERL+G +AK
Sbjct: 45 NEKVKGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKR 104
Query: 260 QVAMNPNNTIFDAKRLIG 313
Q +NP NT F KRLIG
Sbjct: 105 QAVINPENTFFATKRLIG 122
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 64.1 bits (149), Expect = 5e-12
Identities = 29/74 (39%), Positives = 46/74 (62%)
Frame = +2
Query: 92 AKAPAVGIDLGTTYSCVGVFRHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKSQVAM 271
++ VGID G + + + V R+ +++I N+ NR+TPS V++ + R +G+AAKS A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 272 NPNNTIFDAKRLIG 313
N NT+ KRL G
Sbjct: 63 NFRNTVGSLKRLAG 76
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 50.8 bits (116), Expect = 5e-08
Identities = 21/69 (30%), Positives = 40/69 (57%)
Frame = +2
Query: 107 VGIDLGTTYSCVGVFRHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKSQVAMNPNNT 286
+GI G S + R GK +++AN++GNR PS +++ + G A+ Q+ N +N+
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86
Query: 287 IFDAKRLIG 313
+ + + L+G
Sbjct: 87 VTNFRDLLG 95
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 33.1 bits (72), Expect = 0.010
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 107 VGIDLGTTYSCVGVFRHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKSQVAMNPNN 283
+ ID GT ++ + + G +EI+ R S VAF ER+ G A + P +
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPAH 84
Query: 284 TIFDAKRLI 310
+I + K L+
Sbjct: 85 SIRNVKELL 93
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.0 bits (52), Expect = 2.7
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 271 HRNLALGCITDKTLSVGERN 212
H+++ L C +D+T+ +GE N
Sbjct: 321 HQDIILSCSSDRTIFLGELN 340
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 24.6 bits (51), Expect = 3.6
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 250 CITDKTLSVGERNVRGRSSVALVIGDDLNFPMPEHTHTRV 131
CI D+ ++ GE R+ + L + + PEH+ R+
Sbjct: 748 CIIDQFIAAGETKWLQRTGIVLSLPHGYDGQGPEHSSARM 787
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 23.8 bits (49), Expect = 6.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 182 DQGNRTTPSYVAFTDTERLIGDAAKSQVA 268
D+G T S+ +F D + + GDA + + A
Sbjct: 49 DEGLNTARSFSSFQDLKGMSGDAKEQESA 77
>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
Pho4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 463
Score = 23.4 bits (48), Expect = 8.3
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = -1
Query: 279 LGFIATWLLAASPIRRSVSVNATYEGVVLLPWSLAMISTF--PCRNTPT 139
L I+ WLLAAS + S +E L IS + P N PT
Sbjct: 3 LSGISLWLLAASIVHAGKSQFEAFENEFYFKDHLGTISVYHEPYFNGPT 51
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 23.4 bits (48), Expect = 8.3
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +2
Query: 104 AVGIDLGTTYSCVGVFRHGKVEIIAND 184
A+G LG Y+C+ +F + +A +
Sbjct: 428 AIGFKLGYIYACINLFSSFMIFFLAKE 454
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 23.4 bits (48), Expect = 8.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 169 LNFPMPEHTHTRVGCAQIDTN 107
L+ + EHTH R+ Q+D+N
Sbjct: 375 LDHELYEHTHKRMTQMQVDSN 395
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 23.4 bits (48), Expect = 8.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 257 SQVAMNPNNTIFDAKRLIG 313
S+ +NPNN I ++ R++G
Sbjct: 131 SEHKINPNNVIHNSSRILG 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,105
Number of Sequences: 5004
Number of extensions: 24358
Number of successful extensions: 81
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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