Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_F01
(410 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces... 33 0.013
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 29 0.37
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 28 0.65
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 27 1.5
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 25 3.5
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 25 3.5
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 3.5
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom... 25 4.6
SPAC25B8.07c |||hypoxia induced family protein|Schizosaccharomyc... 25 6.1
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 24 8.0
>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 33.5 bits (73), Expect = 0.013
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +3
Query: 87 SLNTYFNETQLTLFGPYSILGRSVVIHTRSRD 182
++ T F+++ ++LFG SI+GR++VIH D
Sbjct: 95 NIKTTFSDSVISLFGANSIIGRTIVIHAGEDD 126
>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 28.7 bits (61), Expect = 0.37
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 114 QLTLFGPYSILGRSVVIHTRSRDRRWACSSIERGYRPSEAREIRGIASF---HH 266
QL + PY I+ S +HT++RD + S E+G R + EIRG F HH
Sbjct: 464 QLLEYSPYRIVYISCNVHTQARDVGFLLSQ-EKG-RSYKIDEIRGFDLFPQSHH 515
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 27.9 bits (59), Expect = 0.65
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 201 SIERGYRPSEAREIRGIASFHHPGGFAYGYVRMTQLIHND 320
++ RG + +RG+ H G F +G ++ T+ ND
Sbjct: 1472 TVGRGIKDIFVSPVRGLQGNHSVGSFRHGIIKFTEKYVND 1511
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 26.6 bits (56), Expect = 1.5
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 240 IRGIASFHHPGGFAYGYVRMTQLIHNDGSTSDTVIEVKL-RYPGVRDRN 383
+R + +F H G AY + Q++H + V E +L RY G+ N
Sbjct: 263 LRNLLNFGHSIGHAYEAILYPQILHGECVAIGMVKEAELARYLGILKPN 311
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 3.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 203 YRTRVQALGGSRDPWH 250
+RTRVQA+GG P H
Sbjct: 160 FRTRVQAVGGHYPPGH 175
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 3.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 186 RWACSSIERGYRPSEAREIRGIASF 260
++ S I +GY P+ ARE G+ +
Sbjct: 163 QYGLSGIMKGYNPTAAREAHGLGMY 187
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 3.5
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +3
Query: 159 VIHTRSRDRRWACSSIERGYRPSEAREIRGIASFHHPG 272
++ +S + AC+ + RP+ + + +ASFH G
Sbjct: 173 ILEHKSISTKGACNRVRSARRPANSSKESLLASFHETG 210
>SPBC776.07 |||mitochondrial Mam33 family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 4.6
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 377 ISNSGISKLNFD-NSVAGAAVVVNELRHADVPVR 279
+S + +N+D V G+AVVV + +H D +R
Sbjct: 77 LSEISLPPVNYDIEDVQGSAVVVLKAKHGDENIR 110
>SPAC25B8.07c |||hypoxia induced family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 113
Score = 24.6 bits (51), Expect = 6.1
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 68 SLRQF*KFKYVFQRNTVNALRTL*HFGTFCCDTY 169
SL + K KYVF RN L L GTF Y
Sbjct: 24 SLSRSEKLKYVFVRNPFIPLGCLMTVGTFLASGY 57
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 24.2 bits (50), Expect = 8.0
Identities = 6/24 (25%), Positives = 14/24 (58%)
Frame = -2
Query: 268 GWWNEAMPRISRASEGLYPRSILE 197
GWW+ + + + GL+P + ++
Sbjct: 902 GWWDGEIINVPNSKRGLFPSNFVQ 925
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,600,320
Number of Sequences: 5004
Number of extensions: 30648
Number of successful extensions: 102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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