Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_F01
(410 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 36 0.017
03_01_0301 - 2357324-2358861,2359553-2359661 31 0.27
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 31 0.36
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 30 0.83
04_01_0526 - 6901003-6901056,6901070-6901404,6901423-6901607,690... 30 0.83
03_05_0705 - 26965352-26965542,26965732-26965763,26966141-269662... 29 1.9
03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521... 29 1.9
06_03_1494 + 30554997-30555608,30555707-30555915,30556006-305561... 28 2.5
03_05_0945 - 29070388-29072024,29072117-29072210 28 3.3
08_02_1260 - 25680618-25680677,25680763-25680893,25681085-256811... 27 4.4
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805... 27 4.4
03_02_0992 + 13049871-13050449 27 5.8
08_01_0658 - 5682425-5682832,5682878-5683000 27 7.7
03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,426... 27 7.7
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 35.5 bits (78), Expect = 0.017
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +3
Query: 99 YFNETQLTLFGPYSILGRSVVIHTRSRD 182
+ + Q++L GP+SILGR+VV+H S D
Sbjct: 107 FIKDLQISLSGPHSILGRAVVVHADSDD 134
>03_01_0301 - 2357324-2358861,2359553-2359661
Length = 548
Score = 31.5 bits (68), Expect = 0.27
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 246 GIASFHHPGGFAYGYVRMTQLIHNDGSTSDTVIEVKLRYPGVRDRNL 386
G AS+ HPG + G + + ND + SD +++ RY + NL
Sbjct: 427 GHASYAHPGCYLLGSEKAGVGVRNDAARSDILVDSSTRYKIISAGNL 473
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 31.1 bits (67), Expect = 0.36
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 93 NTYFNETQLTLFGPYSILGRSVVIHTRSRD 182
N + ++Q+ L GP SI+GR+VV+H D
Sbjct: 213 NIHVVDSQIPLTGPNSIIGRAVVVHADPDD 242
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 29.9 bits (64), Expect = 0.83
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 93 NTYFNETQLTLFGPYSILGRSVVIHTRSRD 182
N +++Q+ L G +SI+GR+VV+H D
Sbjct: 95 NVNVSDSQIPLTGAHSIIGRAVVVHADPDD 124
>04_01_0526 -
6901003-6901056,6901070-6901404,6901423-6901607,
6902201-6904641
Length = 1004
Score = 29.9 bits (64), Expect = 0.83
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 386 QVPISNSGISKLNFDNSVAGAAVVVNELR 300
QV S G++KLN D AGA +++ + R
Sbjct: 860 QVANSTKGVAKLNVDAGEAGAGIIIRDCR 888
>03_05_0705 -
26965352-26965542,26965732-26965763,26966141-26966235,
26966737-26966810,26966894-26967029,26967137-26967200,
26967285-26967350,26967445-26967587,26969314-26969407,
26969779-26969902,26970016-26970193,26970273-26970395,
26970884-26970955,26971032-26971139,26972511-26972627,
26972757-26972889,26973209-26973299,26974642-26974722,
26975342-26975421,26975500-26975705,26977417-26977893
Length = 894
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +3
Query: 186 RWACSSIERGYRPSEAREIRGIASFHHPGGFAYGYVRMTQLIHNDGSTSDTVIEVKLRYP 365
R AC+SIE GY P + + HH F + Q+ + TV++ K+ +P
Sbjct: 718 RKACASIEEGYLPPVTFVV--VQKRHHTRLFPEDHHARDQMDRSRNILPGTVVDTKICHP 775
Query: 366 GVRD 377
D
Sbjct: 776 SEFD 779
>03_02_0039 -
5213699-5214775,5214815-5215093,5215300-5215776,
5216073-5216438
Length = 732
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -1
Query: 302 RHADVPVREPSWVVERGDATDLASLRGPVPAFYTRTCPSTIPTPCMYHNRTS 147
+H D+PVR P+ V++ + LA + A +C P P + +R S
Sbjct: 369 QHVDIPVRAPASVIDDLEQA-LAKMEIAAAAATPESCRGMSPPPSLLRSRQS 419
>06_03_1494 +
30554997-30555608,30555707-30555915,30556006-30556155,
30556254-30556312,30556852-30556961,30557216-30557322,
30557443-30557581,30557705-30557821,30557918-30558025,
30558221-30558292,30558783-30558948,30559044-30559165,
30559245-30559382,30559462-30559604,30559699-30559761,
30560107-30560170,30560238-30560373,30560478-30560551,
30560640-30560734,30560829-30560860,30560973-30561175
Length = 972
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +3
Query: 156 VVIHTRSRDRRWACSSIERGYRPSEAREIRGIASFHHPGGFAYGYVRMTQLIHNDGSTSD 335
V++H R+ AC+S+E Y+P + + HH FA+ + + +
Sbjct: 783 VLLHELDAIRK-ACASLEANYQPQVTFIV--VQKRHHTRLFAHNHNDQNSVDRSGNILPG 839
Query: 336 TVIEVKLRYP 365
TV++ K+ +P
Sbjct: 840 TVVDSKICHP 849
>03_05_0945 - 29070388-29072024,29072117-29072210
Length = 576
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +3
Query: 186 RWA-CSSIE--RGYRPSEAREIRGIASFHHPGGFAYGYVRMTQLIHNDGSTSDTVIEVKL 356
RW S++E G +P+ G AS+ PG + G + I ND + S+ ++
Sbjct: 431 RWVDASALEYTAGNKPAVYSSRNGHASYPFPGVYLQGSAALGIGIRNDAARSELAVDSSA 490
Query: 357 RY 362
+Y
Sbjct: 491 KY 492
>08_02_1260 -
25680618-25680677,25680763-25680893,25681085-25681163,
25681250-25681280,25681358-25681410,25681441-25681511,
25681610-25681678,25681776-25681889,25683101-25683293
Length = 266
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Frame = -1
Query: 281 REPSWVVER-----GDATDLASLRGPVP-AFYTRTC 192
REPSW + + GD+T + SL GP P Y C
Sbjct: 210 REPSWELTKPLPLDGDSTSIVSLLGPKPDVHYIYVC 245
>02_05_1337 -
35780076-35780290,35780377-35780408,35780490-35780584,
35780670-35780743,35780851-35780986,35781072-35781135,
35781333-35781395,35781514-35781656,35781752-35781889,
35781973-35782094,35782210-35782375,35782647-35782652,
35782988-35783059,35783241-35783348,35783719-35783848,
35783964-35784070,35784896-35785005,35785302-35785435,
35785528-35785982,35786068-35786595
Length = 965
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +3
Query: 186 RWACSSIERGYRPSEAREIRGIASFHHPGGFAYGYVRMTQLIHNDGSTSDTVIEVKLRYP 365
R AC+S+E Y+P + + HH FA+ + + + TV++ K+ +P
Sbjct: 781 RKACASLETNYQPKVTFIV--VQKRHHTRLFAHNHNDQNSVDRSGNILPGTVVDSKICHP 838
>03_02_0992 + 13049871-13050449
Length = 192
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = -2
Query: 247 PRISRASEGLYPRSILEHAHRRSRLRVCITTERP 146
P SR+ EG R HRR R RVC TT P
Sbjct: 113 PAGSRSGEGGSSRHC-RFLHRRHRRRVCATTVAP 145
>08_01_0658 - 5682425-5682832,5682878-5683000
Length = 176
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 183 RRWACSSIERGYRPSEAREIRG 248
RRW + G RPSE RE G
Sbjct: 6 RRWVKGEVRSGRRPSERREKSG 27
>03_01_0577 +
4261249-4262055,4262149-4262203,4262293-4262468,
4262554-4262718,4262811-4263178,4263225-4263861,
4263952-4265844,4266325-4266672
Length = 1482
Score = 26.6 bits (56), Expect = 7.7
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = -1
Query: 389 SQVPISNSGISKLNFDNSVAGAAVVV-----NELRHAD-VPVREPSWVVERGDATDLASL 228
S + + + + + D AG VVV +R+AD + V + VVE G DL +
Sbjct: 772 SALDTQSEAVVQQSIDRLAAGRTVVVIAHRLATVRNADTIAVLDRGAVVESGRHADLMAR 831
Query: 227 RGPVPA 210
RGP A
Sbjct: 832 RGPYSA 837
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,926,162
Number of Sequences: 37544
Number of extensions: 216716
Number of successful extensions: 654
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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