Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_F01
(410 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 31 0.33
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 31 0.33
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 31 0.33
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 31 0.33
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 31 0.33
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 31 0.33
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 31 0.33
U39470-2|AAC71118.1| 862|Caenorhabditis elegans Temporarily ass... 31 0.43
AL021497-4|CAA16407.1| 386|Caenorhabditis elegans Hypothetical ... 29 1.3
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 28 3.0
U80032-5|AAB53878.1| 552|Caenorhabditis elegans Hypothetical pr... 27 7.0
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 27 7.0
AF101309-5|ABD94097.1| 543|Caenorhabditis elegans Hypothetical ... 27 7.0
AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical ... 27 7.0
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 27 7.0
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 27 7.0
Z93385-2|CAB07637.1| 358|Caenorhabditis elegans Hypothetical pr... 26 9.2
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 31.1 bits (67), Expect = 0.33
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +3
Query: 105 NETQLTLFGPYSILGRSVVIHTRSRD 182
+++ +L G YSI+GRSVVIH ++ D
Sbjct: 124 SDSLASLSGQYSIIGRSVVIHEKTDD 149
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 31.1 bits (67), Expect = 0.33
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 108 ETQLTLFGPYSILGRSVVIHTRSRD 182
+T +TL+GP +++GRS+V+H D
Sbjct: 101 DTLVTLYGPNTVVGRSMVVHAGQDD 125
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 31.1 bits (67), Expect = 0.33
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 108 ETQLTLFGPYSILGRSVVIHTRSRD 182
+T +TL+GP +++GRS+V+H D
Sbjct: 101 DTLVTLYGPNTVVGRSMVVHAGQDD 125
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 31.1 bits (67), Expect = 0.33
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 108 ETQLTLFGPYSILGRSVVIHTRSRD 182
+T +TL+GP +++GRS+V+H D
Sbjct: 101 DTLVTLYGPNTVVGRSMVVHAGQDD 125
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 31.1 bits (67), Expect = 0.33
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 108 ETQLTLFGPYSILGRSVVIHTRSRD 182
+T +TL+GP +++GRS+V+H D
Sbjct: 123 DTLVTLYGPNTVVGRSMVVHAGQDD 147
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 31.1 bits (67), Expect = 0.33
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +3
Query: 105 NETQLTLFGPYSILGRSVVIHTRSRD 182
+++ +L G YSI+GRSVVIH ++ D
Sbjct: 124 SDSLASLSGQYSIIGRSVVIHEKTDD 149
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 31.1 bits (67), Expect = 0.33
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +3
Query: 105 NETQLTLFGPYSILGRSVVIHTRSRD 182
+++ +L G YSI+GRSVVIH ++ D
Sbjct: 124 SDSLASLSGQYSIIGRSVVIHEKTDD 149
>U39470-2|AAC71118.1| 862|Caenorhabditis elegans Temporarily
assigned gene nameprotein 127 protein.
Length = 862
Score = 30.7 bits (66), Expect = 0.43
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = -2
Query: 274 PPGWWNEAMPRISRASEGLYPRSILEHAHRR--SRLRVCITTERPKML*GPKSVNCVSLK 101
PPG+ + MP I R + +++ HAH R +TE+ G S+ C +
Sbjct: 522 PPGYAQQQMPVIHRKCSSMDSQAVAAHAHLNYMHRSSAVSSTEQLDRHSGTDSMKCSPPR 581
Query: 100 YVFKLLELSKRPYLSPKS 47
+ + P S KS
Sbjct: 582 HKLSVASCHANPLSSSKS 599
>AL021497-4|CAA16407.1| 386|Caenorhabditis elegans Hypothetical
protein Y51A2D.8 protein.
Length = 386
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 383 VPISNSGISKLNFDNSVAG-AAVVVNELRHADVPVREPSWVVERGDATDLASLRGPV 216
VP +N+G+ LNFD A +N+ RH R P + R + + + GP+
Sbjct: 111 VPSNNTGLPMLNFDKKKPDFRAADMNKTRHKRRSTRYPDYFDLRNEKINGRYIVGPI 167
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 27.9 bits (59), Expect = 3.0
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 102 FNETQLTLFGPYSILGRSVVIHTRSRD 182
F++ ++LFG +++GRS+V+H D
Sbjct: 119 FSDKVVSLFGANTVIGRSMVVHVDRDD 145
>U80032-5|AAB53878.1| 552|Caenorhabditis elegans Hypothetical
protein C32E12.1 protein.
Length = 552
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 344 DNSVAGAAVVVNELR-HADVPVREPSWVVERGD 249
+N VA + LR + P++EP++VV RGD
Sbjct: 391 ENPVAAKKNPFDPLRSELETPIQEPAFVVNRGD 423
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 226 EGLYPRSILEHAHRRSRLRVCITTERPKML*GPK--SVNCV 110
EGLY +L RRS +C T +R + K S+NCV
Sbjct: 73 EGLYFDRLLARCERRSSNHLCATGDRVTLNVRQKAVSINCV 113
>AF101309-5|ABD94097.1| 543|Caenorhabditis elegans Hypothetical
protein H24G06.1e protein.
Length = 543
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 107 RNTVNALRTL*HFGTFCCDTYTESGSSMGMFEYRTRVQALGGSRD 241
RN N L + FGTF D+ +SGS+ + R +++G D
Sbjct: 199 RNADN-LGNMESFGTFDADSRMKSGSTSSLAHSRMMARSIGNLND 242
>AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical
protein H24G06.1d protein.
Length = 669
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 107 RNTVNALRTL*HFGTFCCDTYTESGSSMGMFEYRTRVQALGGSRD 241
RN N L + FGTF D+ +SGS+ + R +++G D
Sbjct: 325 RNADN-LGNMESFGTFDADSRMKSGSTSSLAHSRMMARSIGNLND 368
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 107 RNTVNALRTL*HFGTFCCDTYTESGSSMGMFEYRTRVQALGGSRD 241
RN N L + FGTF D+ +SGS+ + R +++G D
Sbjct: 1257 RNADN-LGNMESFGTFDADSRMKSGSTSSLAHSRMMARSIGNLND 1300
>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
protein H24G06.1a protein.
Length = 1680
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 107 RNTVNALRTL*HFGTFCCDTYTESGSSMGMFEYRTRVQALGGSRD 241
RN N L + FGTF D+ +SGS+ + R +++G D
Sbjct: 1336 RNADN-LGNMESFGTFDADSRMKSGSTSSLAHSRMMARSIGNLND 1379
>Z93385-2|CAB07637.1| 358|Caenorhabditis elegans Hypothetical
protein M01E5.2 protein.
Length = 358
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 79 LSKRPYLSPKSPNS 38
LSKRP LSPK P S
Sbjct: 16 LSKRPILSPKKPKS 29
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,953,815
Number of Sequences: 27780
Number of extensions: 174262
Number of successful extensions: 535
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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