Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E24
         (93 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    25   1.3  
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    25   1.3  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    24   2.3  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 14  AEEXXXXXXXXXXXXNSYWVAQDSSY 91
           AEE            NSYWV QD++Y
Sbjct: 102 AEERVGRYCSNLRVLNSYWVNQDATY 127


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 14  AEEXXXXXXXXXXXXNSYWVAQDSSY 91
           AEE            NSYWV QD++Y
Sbjct: 102 AEERVGRYCSNLRVLNSYWVNQDATY 127


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 24  VLVAGVVVYACLIHTG 71
           V +AG+ +Y C+++TG
Sbjct: 740 VAIAGLFIYFCVVYTG 755


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 298,271
Number of Sequences: 5004
Number of extensions: 2000
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 2,362,478
effective HSP length: 12
effective length of database: 2,302,430
effective search space used: 41443740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)