Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E24
         (93 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493...    29   0.68 
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390...    29   0.68 

>05_03_0257 +
           11145558-11145876,11148181-11148347,11149114-11149311,
           11149405-11149650
          Length = 309

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 5   QSIAEEXXXXXXXXXXXXNSYWVAQDSSY 91
           +S+AEE            NSYWV +DS+Y
Sbjct: 204 RSVAEERAGRKLGGLRVLNSYWVNEDSTY 232


>03_05_0228 -
           22137771-22138016,22138109-22138306,22138852-22139018,
           22139129-22139132
          Length = 204

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 5   QSIAEEXXXXXXXXXXXXNSYWVAQDSSY 91
           +S+AEE            NSYWV +DS+Y
Sbjct: 99  RSVAEERAGRKLGGLRVLNSYWVNEDSTY 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,806
Number of Sequences: 37544
Number of extensions: 14216
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 14,793,348
effective HSP length: 12
effective length of database: 14,342,820
effective search space used: 258170760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)