Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E24
         (93 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   5.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   5.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    19   7.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    19   7.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    19   7.1  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
          transporter-1B protein.
          Length = 593

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 43 WSTRA*FILGSTGLFI 90
          WS++  FIL   GL I
Sbjct: 22 WSSKIEFILSVVGLAI 37


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 43  WSTRA*FILGSTGLFI 90
           WS++  FIL   GL I
Sbjct: 75  WSSKIEFILSVVGLAI 90


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 50  VDHHTGDQH 24
           V +HT DQH
Sbjct: 121 VPNHTSDQH 129


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 50  VDHHTGDQH 24
           V +HT DQH
Sbjct: 121 VPNHTSDQH 129


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 50  VDHHTGDQH 24
           V +HT DQH
Sbjct: 119 VPNHTSDQH 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,821
Number of Sequences: 438
Number of extensions: 148
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 12
effective length of database: 141,087
effective search space used:  2539566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)