Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E23
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    28   0.40 
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    25   2.1  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    25   2.1  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   2.8  
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    25   3.8  
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    24   5.0  

>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 182 RRCFNVGVLSDRPFARLHDRRRW 114
           +R F+V VLS+ PF+  HD +RW
Sbjct: 295 KRVFDVNVLSNEPFSD-HDFQRW 316


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 303 PHRTLPQRKPSCPSSPVYQQPLAVDP 226
           P   LP R+P  P+ PV ++PL  +P
Sbjct: 99  PEEPLP-REPPLPNEPVPEEPLPGEP 123


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 318 LLLHCPHRTLPQRKPSCPSSPVY 250
           LL   PHR L    PS PS+P Y
Sbjct: 130 LLQSTPHRQLFPPTPSTPSTPSY 152


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 294 TLPQRKPSCPSSPVYQQPLAVDP 226
           +LP+RKPS P + +   P   DP
Sbjct: 214 SLPRRKPSRPGTAITLPPYESDP 236


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 267 PSSPVYQQPLAVDPSS 220
           P  PV QQP +VDP +
Sbjct: 429 PEQPVTQQPASVDPQT 444


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 176 CFNVGVLSDRPFARLHDRRRWS 111
           CF +      P +R HD RRW+
Sbjct: 157 CFRMLGYLGTPRSRFHDNRRWN 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.123    0.332 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 731,719
Number of Sequences: 5004
Number of extensions: 10344
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)