Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E23
         (322 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0567 + 4469926-4470055,4470827-4470886,4471418-4471635           29   0.62 
01_01_1008 - 7987936-7988628,7988923-7989102                           28   1.4  
06_02_0293 + 13849250-13849341,13850044-13850112,13850257-138502...    27   2.5  
08_01_1039 + 10548266-10548619,10548734-10549213,10549408-105495...    27   3.3  
06_01_1114 - 9179614-9180167,9180223-9180544,9181524-9181820,918...    27   3.3  
09_02_0027 + 3105963-3106276,3106298-3107027,3107069-3107134,310...    27   4.3  
08_02_0114 + 12754155-12754370,12754792-12755340,12755410-127555...    27   4.3  
08_01_0167 + 1370733-1371316,1371590-1371765,1371865-1372101,137...    27   4.3  
05_03_0336 - 12643942-12644816,12645021-12645276,12645667-12646380     27   4.3  
02_03_0243 - 16791789-16793306                                         26   7.6  

>11_01_0567 + 4469926-4470055,4470827-4470886,4471418-4471635
          Length = 135

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 165 WRS*RPALCETSRPPP 118
           W+  RPA C T+RPPP
Sbjct: 3   WQQRRPATCATARPPP 18


>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 92  AKIEARPTTGGGREVSQRAGR*ERQR*SNAGQTETANTAR*RKEEGS 232
           A++  R   GGG EV+       R+R   A + E     R R+ EGS
Sbjct: 238 ARVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEGAVRLREREGS 284


>06_02_0293 +
           13849250-13849341,13850044-13850112,13850257-13850266,
           13850448-13850483,13850978-13851039,13851260-13851359,
           13851428-13851469,13851756-13851839,13851955-13852095
          Length = 211

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +2

Query: 239 KGCW*TGEEGQE 274
           KGCW  GEEGQE
Sbjct: 4   KGCWSKGEEGQE 15


>08_01_1039 +
           10548266-10548619,10548734-10549213,10549408-10549510,
           10549550-10550175
          Length = 520

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 303 PHRTLPQRKPSCPSSPVYQ 247
           P +TLP +KP+ P+ P ++
Sbjct: 28  PQKTLPTKKPAVPAQPTFK 46


>06_01_1114 -
           9179614-9180167,9180223-9180544,9181524-9181820,
           9181991-9182878,9182896-9182941,9182964-9183350,
           9183648-9183985
          Length = 943

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 303 PHRTLPQRKPSCPSSPVYQ 247
           P +TLP  KP+ P+ P+++
Sbjct: 28  PQKTLPTEKPAVPAPPIFK 46


>09_02_0027 +
           3105963-3106276,3106298-3107027,3107069-3107134,
           3107192-3107324,3108985-3109088
          Length = 448

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 303 PHRTLPQRKPSCPSSPVYQ 247
           P +TLP +KP+ P+ P ++
Sbjct: 28  PQKTLPTKKPAIPAPPTFK 46


>08_02_0114 +
           12754155-12754370,12754792-12755340,12755410-12755512,
           12755552-12756060
          Length = 458

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 303 PHRTLPQRKPSCPSSPVYQ 247
           P +TLP +KP+ P+ P ++
Sbjct: 28  PQKTLPTKKPAIPAPPTFK 46


>08_01_0167 +
           1370733-1371316,1371590-1371765,1371865-1372101,
           1372377-1372495,1372530-1372906,1373012-1373117,
           1373520-1373606,1375367-1375421,1375775-1376311,
           1377669-1377739,1377899-1377938,1379560-1379852
          Length = 893

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 303 PHRTLPQRKPSCPSSPVYQ 247
           P +TLP +KP+ P+ P ++
Sbjct: 28  PQKTLPTKKPAVPAPPTFK 46


>05_03_0336 - 12643942-12644816,12645021-12645276,12645667-12646380
          Length = 614

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 303 PHRTLPQRKPSCPSSPVYQ 247
           P +TLP +KP+ P+ P ++
Sbjct: 28  PQKTLPTKKPAVPAPPTFK 46


>02_03_0243 - 16791789-16793306
          Length = 505

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 126 PPPVVGRASILARQXXXXXXXXXCHSHSPT 37
           PPPV+ R SI  R+          H H  T
Sbjct: 203 PPPVIDRTSIREREDIHDVMTARLHDHVKT 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.123    0.332 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,652,388
Number of Sequences: 37544
Number of extensions: 88369
Number of successful extensions: 239
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)