Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E23
         (322 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022392-1|AAH22392.1|  602|Homo sapiens solute carrier family 6...    28   5.4  

>BC022392-1|AAH22392.1|  602|Homo sapiens solute carrier family 6
           (neurotransmitter transporter, GABA), member 13 protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 312 LHCPHRTLPQRKPSCPSSP 256
           L CP   LPQR P+ PS+P
Sbjct: 567 LMCPAEDLPQRNPAGPSAP 585


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.310    0.123    0.332 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,344,410
Number of Sequences: 237096
Number of extensions: 438603
Number of successful extensions: 816
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1569468906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)