Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E23
         (322 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79757-5|CAB02126.2|  551|Caenorhabditis elegans Hypothetical pr...    29   0.99 
AY491013-1|AAS18682.1|  464|Caenorhabditis elegans nose resistan...    29   0.99 
AY491012-1|AAS18681.1|  573|Caenorhabditis elegans nose resistan...    29   0.99 
U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in bl...    27   4.0  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    26   7.0  

>Z79757-5|CAB02126.2|  551|Caenorhabditis elegans Hypothetical
           protein F55B12.5 protein.
          Length = 551

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 282 RKPSCPSSPVYQQPLAVDPSSF 217
           +KP  P SP YQ+P A DP+ F
Sbjct: 201 QKPIPPESPNYQKPEAGDPNGF 222


>AY491013-1|AAS18682.1|  464|Caenorhabditis elegans nose resistant
           to fluoxetine protein.
          Length = 464

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 282 RKPSCPSSPVYQQPLAVDPSSF 217
           +KP  P SP YQ+P A DP+ F
Sbjct: 89  QKPIPPESPNYQKPEAGDPNGF 110


>AY491012-1|AAS18681.1|  573|Caenorhabditis elegans nose resistant
           to fluoxetine protein.
          Length = 573

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 282 RKPSCPSSPVYQQPLAVDPSSF 217
           +KP  P SP YQ+P A DP+ F
Sbjct: 198 QKPIPPESPNYQKPEAGDPNGF 219


>U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 10 protein.
          Length = 375

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 288 PQRKPSCPSSPVYQQP 241
           PQ++P+C  +PV QQP
Sbjct: 129 PQQQPACDCAPVAQQP 144



 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 285 QRKPSCPSSPVYQQPLAVDP 226
           Q++P+C  +PV Q P A  P
Sbjct: 69  QQQPACNCAPVQQDPCACQP 88



 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 285 QRKPSCPSSPVYQQP 241
           Q++PSC  +PV QQP
Sbjct: 109 QQQPSCDCAPVQQQP 123


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 303  PHRTLPQRKPSCPSSPVYQQPLAVDP 226
            P    P RK S  S+P+ + P+ V+P
Sbjct: 1474 PGEDTPSRKSSSSSAPLPEAPIVVEP 1499


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.310    0.123    0.332 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,247,818
Number of Sequences: 27780
Number of extensions: 61996
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)