Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E20
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    28   0.37 
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    26   1.5  
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    26   1.5  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    26   2.0  
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc...    26   2.0  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   4.6  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    24   6.1  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    24   8.0  
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    24   8.0  

>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 28.3 bits (60), Expect = 0.37
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 49  STKHSRESKKLKANVAAYVKKSGKKANYMSKIKKIK 156
           +T    +SK  KA  +  V +S  KAN  + IKK+K
Sbjct: 330 TTNRDEDSKGKKAKASPKVSQSSLKANGTTAIKKVK 365


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 145 LFYSCSWLFSRIFSH 101
           LFY+C W+F +I  H
Sbjct: 672 LFYNCEWIFEKIQFH 686


>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 55  KHSRESKKLKANVAAYVKKSGKKANYMSKIKKIKPTSAAAAA 180
           ++ R   +  A  AA  ++  KKA   S+ K IK  SAA++A
Sbjct: 94  RNQRPEVRAAARAAALKQRKDKKAASESEKKAIKAKSAASSA 135


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 52  TKHSRESKKLKANVAAYVKKSGKKANYMSKIK 147
           TK + E+KKL   +  Y++ + KK     K K
Sbjct: 109 TKDAEENKKLFEKIIEYIRATNKKVGVFPKDK 140


>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 301 NK*IVKLEE-GTTKASQVDEGVWHAQ 227
           N  +  LE+ G  K +Q+DE VWHA+
Sbjct: 43  NSAVKTLEDYGAGKIAQLDETVWHAK 68


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 231 PRAPSAPSSLSELFMFRGC-CRGGCRFNFLYFTHVVGF 121
           P+A + P+S+S+  ++ GC  R   RF  L + H   F
Sbjct: 164 PQALAVPASISDSVIYYGCKYRSKNRFPTLTYLHKNSF 201


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 37  GRNISTKHSRESKK---LKANVAAYVKKSGKKANYMSKIKKIKPTSAAAAAPEHK 192
           G++  +K S ++KK   L    A+   K+GK +    K  K    SAAA   E K
Sbjct: 167 GKSKPSKKSVKAKKKLRLAEKPASNNSKAGKSSQESKKSSKAPAESAAAVIKEDK 221


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 49  STKHSRESKKLKANVAAYVKKSGKKANYMSKIKKIKPT 162
           S K S+   KL     ++V+   +   YMS I KI+PT
Sbjct: 460 SLKSSKTPWKLFWTGDSHVRNLDRVNQYMSVIDKIQPT 497


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 52  TKHSRESKKLKANVAAYVKKSGKKANYMSKIKKI 153
           T++  + KKL+ +V+AY   + +   Y S I K+
Sbjct: 198 TEYLEKHKKLQIHVSAYSPLANQNDAYNSDISKL 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,251,896
Number of Sequences: 5004
Number of extensions: 22291
Number of successful extensions: 70
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)