Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E20
         (357 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0213 - 22037268-22039496                                         28   2.5  
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221...    27   4.3  
07_03_1128 - 24180130-24180152,24180629-24180669,24180787-241808...    26   7.6  
07_03_1104 + 24001594-24002139                                         26   7.6  
07_01_0185 - 1313472-1313480,1313674-1313710,1314150-1314379,131...    26   7.6  
04_04_0377 - 24816834-24817049,24817128-24817174,24817262-248174...    26   7.6  

>03_05_0213 - 22037268-22039496
          Length = 742

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = -1

Query: 234 MPRAPSAPSSLSELFMFRGCCRGGC----RFNFLYFTHVVGFFPGFFHIR 97
           M      P +L+   +FRG CRGG      F+F+      GF P F   R
Sbjct: 627 MAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFR 676


>03_05_0211 -
           22020515-22020687,22020801-22020831,22022060-22022169,
           22022715-22023102,22023344-22023397,22023739-22023849,
           22023956-22024015,22024618-22024694,22026155-22026188,
           22026267-22027235
          Length = 668

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +1

Query: 10  DDDDITDALGRNISTKHSRESKKLKANVAAYVKKSGKKANYMSKIKKIKPTSAAAAAPEH 189
           DDDDIT +  RN + ++  +  +  A+    +K   ++ +Y S+ +K K  S+ A     
Sbjct: 439 DDDDITPSKKRNKALEYDTDEDEDDADP---MKSDSEEDDYDSEKEKAKKNSSDAKDTAS 495

Query: 190 KK 195
           KK
Sbjct: 496 KK 497


>07_03_1128 -
           24180130-24180152,24180629-24180669,24180787-24180878,
           24181059-24181144,24181277-24181424,24181505-24181542,
           24182301-24182322
          Length = 149

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +2

Query: 164 PPRQQPL---NIKSSDSELGAEGALGMPHPFIHLRGLCG 271
           PP+Q+ L    ++      G +G   +  PF++L G+CG
Sbjct: 100 PPKQKDLMHREMRQRGGNGGGDGNNRVQEPFLYLDGVCG 138


>07_03_1104 + 24001594-24002139
          Length = 181

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 23/64 (35%), Positives = 31/64 (48%)
 Frame = +1

Query: 1   ARGDDDDITDALGRNISTKHSRESKKLKANVAAYVKKSGKKANYMSKIKKIKPTSAAAAA 180
           ARG+   +  AL       H R S   KA  A+Y    G KA++       KP++AAAA 
Sbjct: 7   ARGESTALALALAPPPPELHFRCSLCGKA-FASYQALGGHKASHR------KPSAAAAAP 59

Query: 181 PEHK 192
           P H+
Sbjct: 60  PAHR 63


>07_01_0185 -
           1313472-1313480,1313674-1313710,1314150-1314379,
           1314774-1314899,1315009-1315050,1315227-1315367
          Length = 194

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 273 GPQRPLRWMKGCGMPRAPSAPSSLSELFMF 184
           G  +P RW  G G+    +A SS + + +F
Sbjct: 7   GEHQPTRWPPGAGVEERDNASSSPASILLF 36


>04_04_0377 -
           24816834-24817049,24817128-24817174,24817262-24817406,
           24818308-24818409,24818686-24818781
          Length = 201

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +1

Query: 31  ALGRNISTKHSRESKKLKANVAAYVKKSGKKANYMSKIKKIKPTSAAAAAPE 186
           ALGRN S   S  SKK K +  A  K+S K+  + S  +    +S+ +++ +
Sbjct: 99  ALGRNHSRSKSSSSKKEKKDKDA-KKRSKKRRKHRSSSESSSSSSSESSSSD 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,047,902
Number of Sequences: 37544
Number of extensions: 181736
Number of successful extensions: 510
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)