Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_E19
(445 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 33 0.020
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 29 0.32
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 27 1.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 1.7
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 26 2.3
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 26 3.0
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 5.2
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.9
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb... 25 6.9
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 25 6.9
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 24 9.1
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 24 9.1
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 24 9.1
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 33.1 bits (72), Expect = 0.020
Identities = 26/99 (26%), Positives = 42/99 (42%)
Frame = +2
Query: 5 EGYYKAHSTGDIEGMALFKLAKLYEKSNMPNSAAAAYTAACQDSANAGSKELPAAQRYLA 184
+ Y +A L +L LYE+ NSAA+ Y + S E A+ +LA
Sbjct: 461 KSYKRALLGSQTNSSILVRLGNLYEELQDLNSAASMYKQCIKTEETEISPETIKARIWLA 520
Query: 185 QYYLRFSLLDLASHYAYKCLDHDCTKEVGKSILKIISER 301
++ L A Y + L+ D E K++L+ + R
Sbjct: 521 RWELGKKNYREAELYLSEVLNGDLELEEAKALLRELRSR 559
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 29.1 bits (62), Expect = 0.32
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 203 SLLDLASHYAYKCLDHDCTKEVGKSILKIISERRLAPSSSQSGNT-PEDLPDAIKNVSTV 379
SLLD S A +H+ ++LK ++RR PSS NT +K V
Sbjct: 549 SLLDHHSPLATSSSEHEMEATPSPALLKKTNKRRELPSSLTKKNTRTPQRSKEVKKVPAR 608
Query: 380 SLIQDTPKT 406
L Q T K+
Sbjct: 609 KLSQSTKKS 617
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.6 bits (56), Expect = 1.7
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 293 SERRLAPSSSQSG-NTPEDLPDAIKNVSTVSLIQDTPKTPLPSPDV 427
S+RR +SS SG N P + K S + + +P+ P+P+ DV
Sbjct: 1360 SDRRFVNASSTSGMNMPISSSISAKISSIQNSTKYSPRKPIPAKDV 1405
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 1.7
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 311 PSSSQSGNTPEDLPDAIKNVSTVSLIQDTPKTPLPSP 421
PS+ + P P I VS I T K PLP P
Sbjct: 259 PSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPP 295
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 314 SSSQSGNTPEDLPDAIKNVSTVSLIQDTPKTPLPSPDVTP 433
S++ D+P + N STV+L Q P+P V+P
Sbjct: 394 STNTEDEQESDIPQSDANDSTVNLNQPNYANLTPTPQVSP 433
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 3.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 152 KELPAAQRYLAQYYLRFSLLDLAS 223
K++PA Q L+QY RF L L S
Sbjct: 281 KDVPAVQSLLSQYMERFELAHLFS 304
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.0 bits (52), Expect = 5.2
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 308 APSSSQSGNTPEDLPDAIKNVSTVSLIQDTPKTPLP-SPDV--TPDNFS 445
APSSS S P +P +VS+ S D P+TP+ SP + TP FS
Sbjct: 238 APSSSSSSVAPF-VPRRQFSVSSAS---DPPQTPISMSPPIPPTPSQFS 282
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 6.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 305 LAPSSSQSGNTPEDLPDAIKNVSTVSLIQDTPKTPLPS 418
++ +++S TP + A K ST ++ TP T LP+
Sbjct: 530 VSSKAARSATTPAYVGGATKTPSTTKAVESTPST-LPT 566
>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 510
Score = 24.6 bits (51), Expect = 6.9
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +2
Query: 338 PEDLPDAIKNVSTVSLIQD---TPKTPLPSPDVTPDNF 442
P D P+ +K + T D P P PSPD+ N+
Sbjct: 430 PYDHPNEMKTLITAFFNNDFASLPSVPKPSPDLGNGNY 467
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 24.6 bits (51), Expect = 6.9
Identities = 20/98 (20%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Frame = -3
Query: 302 AFQI*SLEYFFLLLWYNHDLNICRHNEMRGPVVRILDNTGLSNAELLATLCFQHWQNLDR 123
AF+ L+ L+W + L+ + + + L N ++N+ A L F+ + + R
Sbjct: 104 AFECIDLDDNCKLIWESTVLSDHQKQSLWTEFIFFLGNFKITNSMSAAMLTFKVYDDSKR 163
Query: 122 LQCTQPQHYLAYSTFHITWLI*TKPCLQYHQ-YCELYN 12
L+ + Y+ + + +I +KP ++ + Y +L++
Sbjct: 164 LKASSMADYIGVLSSKLACII-SKPAVKTPEIYSKLFH 200
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 9.1
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 149 SKELPAAQRYLAQYYLRFSL-LDLASHYAYKCLDHDCTKEVGKSILKIISERRLAPSSSQ 325
SKEL + Q YLAQ ++ + + Y L + ++G S LK S++ LA S S
Sbjct: 56 SKELSSKQAYLAQDFVNVCKDASVFQNVYYYELKKNILTDLGFSDLK-NSDKSLALSKSS 114
Query: 326 S 328
S
Sbjct: 115 S 115
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 24.2 bits (50), Expect = 9.1
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 311 PSSSQSGNTPEDLPDAIKNVSTVSLIQDTPKTPLPSPDVT 430
PS+ +S + + + DA ++ +I + P++ LP+P V+
Sbjct: 14 PSTPESPGSFKGVIDASLEGNSSIMIDEIPESDLPAPQVS 53
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 24.2 bits (50), Expect = 9.1
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2
Query: 278 ILKIISERRLAPSSSQSGNTPEDLPDAIKNVSTVSLIQDTPKTPLPSPDV 427
ILK+I E R+A + P AI SL DTP L + +V
Sbjct: 54 ILKMIQEGRIAGRAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEV 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,831,642
Number of Sequences: 5004
Number of extensions: 36103
Number of successful extensions: 133
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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