Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E19
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58763-2|AAK68876.1|  673|Caenorhabditis elegans Metaphase-to-an...    52   2e-07
Z68303-12|CAA92644.2|  969|Caenorhabditis elegans Hypothetical p...    32   0.16 
Z68303-1|CAC42387.1|  475|Caenorhabditis elegans Hypothetical pr...    32   0.16 
Z68302-9|CAA92636.2|  969|Caenorhabditis elegans Hypothetical pr...    32   0.16 
Z81527-6|CAB04275.1|  739|Caenorhabditis elegans Hypothetical pr...    30   0.66 
Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical pr...    27   4.6  
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AC006762-9|AAF60557.1|  121|Caenorhabditis elegans Hypothetical ...    27   6.1  
Z83239-2|CAB05802.1|  182|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF014939-5|AAB63928.2|  302|Caenorhabditis elegans Hypothetical ...    27   8.1  
AC006633-3|AAK68375.1|  227|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U58763-2|AAK68876.1|  673|Caenorhabditis elegans
           Metaphase-to-anaphase transitiondefect protein 3
           protein.
          Length = 673

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
 Frame = +2

Query: 20  AHSTGDIEGMALFKLAKLYEKSNMPNSAAAAYTA--ACQDSANAGSKELPAAQRYLAQYY 193
           A+  GD+EG AL+ LAKL+E+ +  N AA A+       +   +  +++  A  +LA ++
Sbjct: 528 AYLFGDVEGNALWSLAKLHERYSDDNKAAQAFEVFLVVYELVTSAEEKIIYAIAFLANHF 587

Query: 194 LRFSLLDLASHYAYKCLDHDCTKEVGKSILKIISE 298
            +    D AS YA KCL  +   + G  + + I++
Sbjct: 588 FKIEDFDKASEYATKCLAFETLCQEGNRLFREIAK 622


>Z68303-12|CAA92644.2|  969|Caenorhabditis elegans Hypothetical
           protein ZK792.1a protein.
          Length = 969

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 218 ASHYAYKCLDHDCTKEVGKSILKIISERRL 307
           AS+++Y C+D  C  ++ KSI +I  E  L
Sbjct: 233 ASNFSYHCIDQSCACQIHKSIRRIYEEEHL 262


>Z68303-1|CAC42387.1|  475|Caenorhabditis elegans Hypothetical
           protein ZK792.1b protein.
          Length = 475

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 218 ASHYAYKCLDHDCTKEVGKSILKIISERRL 307
           AS+++Y C+D  C  ++ KSI +I  E  L
Sbjct: 233 ASNFSYHCIDQSCACQIHKSIRRIYEEEHL 262


>Z68302-9|CAA92636.2|  969|Caenorhabditis elegans Hypothetical
           protein ZK792.1a protein.
          Length = 969

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 218 ASHYAYKCLDHDCTKEVGKSILKIISERRL 307
           AS+++Y C+D  C  ++ KSI +I  E  L
Sbjct: 233 ASNFSYHCIDQSCACQIHKSIRRIYEEEHL 262


>Z81527-6|CAB04275.1|  739|Caenorhabditis elegans Hypothetical
           protein F35E12.7a protein.
          Length = 739

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 299 RRLAPSSSQSGNTPEDLPDAIKNVSTVSLIQDTPKTPLPSPDVT 430
           ++LA +SS +  TP  +P   +N+ST S+   + KTP+    +T
Sbjct: 561 QKLAQASSTASTTP--IPITTQNISTASIATPSTKTPITPSLIT 602


>Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical
           protein F58A4.5 protein.
          Length = 786

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 212 DLASHYAYKCLDHDCTKEVGKSILKIISERRLAPSSSQSGNTPEDLPDA 358
           D +S  AY   + +  K++GK+++ + S+   + S      T EDL  A
Sbjct: 283 DESSDEAYDSAEIEMRKKIGKTVIAMKSQEMASQSDDYDKYTEEDLLSA 331


>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
           protein C06E1.10 protein.
          Length = 1148

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 278 ILKIISERR-LAPSSSQSGNTPEDLPDAIKNV 370
           ++ ++S R  L P SS  G+TPE+  + +KNV
Sbjct: 782 LISLLSVREPLIPVSSLRGDTPEETKELMKNV 813


>AC006762-9|AAF60557.1|  121|Caenorhabditis elegans Hypothetical
           protein Y42G9A.2 protein.
          Length = 121

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 95  NSAAAAYTAACQDSANAGSKELPAAQRYLAQYY 193
           ++  AA TA C+DS    S +  A +RY  QY+
Sbjct: 47  DTVLAAKTADCEDSICVSSAKQYAQRRYPTQYH 79


>Z83239-2|CAB05802.1|  182|Caenorhabditis elegans Hypothetical
           protein T09F5.2 protein.
          Length = 182

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +2

Query: 305 LAPSSSQSGNTPEDLPDAIKNVSTVSLIQDTPKTPLPSPDV 427
           ++P+  ++  T  +LP  I    T ++ +  P T  P+P +
Sbjct: 104 ISPAPDKTEPTSSELPPTITKELTAAISRSEPSTSTPAPTI 144


>AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical
           protein Y48G10A.4 protein.
          Length = 965

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 263 LWYNHDLNICRHNEMRGPVVRILDNTGLSNAELLAT 156
           L+Y   L+I R N +  P  R    T LSN +L+ T
Sbjct: 127 LFYRFVLSIDRRNRLAPPAPRATIPTTLSNGQLMPT 162


>AF014939-5|AAB63928.2|  302|Caenorhabditis elegans Hypothetical
           protein ZC132.6 protein.
          Length = 302

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 344 DLPDAIKNVSTVSLIQDTPKTPLPSPDVTPDNFS 445
           D+PD +K +  +  ++  PKT      +T +N++
Sbjct: 107 DMPDMVKFIRLLGALEGEPKTLATKYQITSENYA 140


>AC006633-3|AAK68375.1|  227|Caenorhabditis elegans Hypothetical
           protein F35B3.4 protein.
          Length = 227

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +2

Query: 233 YKCLDHDCTKEVGKSILKIISERRLAPSSSQSGNTPE-DLPDA 358
           Y C  + C K  G   L I SE+ ++P         E +LPDA
Sbjct: 46  YSCGRYGCAKARGSKTLSIKSEKTMSPDEKFMRCCQERNLPDA 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,054,528
Number of Sequences: 27780
Number of extensions: 199356
Number of successful extensions: 606
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)