Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E18
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    28   0.47 
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   1.9  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   2.5  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   2.5  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   4.4  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   7.6  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    24   7.6  
SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyc...    24   7.6  

>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.9 bits (59), Expect = 0.47
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 14  VSLITSNGCGDSLNVLAFTKWTTRHRR 94
           V ++ S+G G   +V+A  +WT RH +
Sbjct: 277 VKVLRSSGSGTMADVIAGVEWTVRHHK 303


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 197 IWMCMNCGLFIVSPKNITQIRL 262
           +W+  NCG+F   P+ ITQ +L
Sbjct: 303 VWISWNCGIFSF-PRGITQSQL 323


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 124 YYAHVIKTKCIHNKYIDYTYKYV*NMDVY 210
           +  H+I     HNK     YKY+  +D+Y
Sbjct: 413 WIVHMINASLDHNKVKRAAYKYIGVVDIY 441


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 159 MNTFSFDDMGVISR 118
           MN FSF+D G+ISR
Sbjct: 1   MNDFSFEDKGLISR 14


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +1

Query: 7   GWSLIDNFEWMRGFSERFGLYEVDYASQKKARTARISATYYAHVIKTKCIHNKYI 171
           G SL  +F++     E   L +    ++K   + R S  YY H +     HN ++
Sbjct: 428 GKSLDLSFDFQSLMGEFENLIKQQEEAKKSLWSKRFSRFYYGHYVFVNTCHNFFL 482


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -2

Query: 65  RPKRSENPRIH 33
           RPKRSE PRI+
Sbjct: 613 RPKRSEKPRIY 623


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 109 RISATYYAH-VIKTKCIHNKYIDYTY 183
           R S  +  H V++ K IH  Y+D TY
Sbjct: 304 RASKDHVMHPVLREKTIHKVYLDTTY 329


>SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 150

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 169 IDYTYKYV*NMDVYELWTFY 228
           +++ YKY  ++DV EL+  Y
Sbjct: 4   LEFVYKYFNSLDVKELYDIY 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,357,630
Number of Sequences: 5004
Number of extensions: 25121
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)