Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E18
         (345 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   3.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   9.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   9.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   9.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   9.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 9/49 (18%), Positives = 30/49 (61%)
 Frame = -1

Query: 303 LYYFDHILIMFSMVSLICVIFFGETIKSPQFIHIHILNVFVSVIDVLIM 157
           L+Y  ++++   ++S +CV+ F    ++ + + + I ++ +S++  L++
Sbjct: 234 LFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGI-SILLSLVVFLLL 281


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 173 ITLTNTFRIWM 205
           +TLT+  R+WM
Sbjct: 107 LTLTDASRVWM 117


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 173 ITLTNTFRIWM 205
           +TLT+  R+WM
Sbjct: 107 LTLTDASRVWM 117


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 171 DVLIMNTFSFDDMGVISRGD 112
           D ++M T +   +GV+  GD
Sbjct: 368 DEIVMLTLTLPGIGVVYNGD 387


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = -1

Query: 291 DHILIMFSMVSLICVIFFGETI 226
           DH++++  ++  + V ++GE I
Sbjct: 374 DHMIMLEMILPGVAVTYYGEEI 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,064
Number of Sequences: 438
Number of extensions: 1627
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)