Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E15
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   1.9  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   4.4  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    24   7.8  
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...    24   7.8  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    24   7.8  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = -3

Query: 268  TMFDTFISYFLXTCFSSSTYHYKHRMAN--FLFAENIISCLFINCIVIQIKTFFIYKPR* 95
            + F+T  +  +   FSS  Y     ++     F  N+   +F+  ++      F+     
Sbjct: 991  SFFETTPTGRILNRFSSDVYRVDEVISRVFMFFFRNLFQIVFVLAVICYSSPMFMILIVP 1050

Query: 94   LFYIYSYN 71
            LF++Y YN
Sbjct: 1051 LFFLYRYN 1058


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 111 IKKVLICITMQLINKHDIMF 170
           + KV+ICI M  +N H I F
Sbjct: 563 VDKVVICIPMDKLNTHLITF 582


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 88  YIYSYNIQKTVIHR*HYFTCQSFRQTLVP 2
           Y YSY I  TVI   + +  + + + L+P
Sbjct: 188 YRYSYKISVTVIRANNVYGPRQYEEKLIP 216


>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 220 KKNTCXENRI*TYQTW 267
           +KN   +NR  TYQ+W
Sbjct: 35  RKNLATDNRTQTYQSW 50


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 7/24 (29%), Positives = 18/24 (75%)
 Frame = +2

Query: 80  INIKKSSRFINKKSLDLYHNAINK 151
           ++I+  ++ +++KSLD YH  +++
Sbjct: 182 VSIQSITKVLDEKSLDRYHRLLDR 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,450
Number of Sequences: 5004
Number of extensions: 26526
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)