Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E15
         (348 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058...    27   4.0  
09_06_0230 + 21717225-21717301,21717888-21717972,21718045-217181...    27   5.3  

>10_07_0172 +
           13804803-13805293,13805423-13805537,13805766-13805831,
           13805921-13806009,13806103-13806193,13806312-13806458,
           13806575-13806667,13806745-13806846,13806957-13807541,
           13808523-13808813,13808866-13808937
          Length = 713

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -2

Query: 167 HNIMFIY*--LHCDTNQDFFY 111
           HN+ + Y   LHC+ NQ FFY
Sbjct: 233 HNLHYYYHRWLHCEINQPFFY 253


>09_06_0230 +
           21717225-21717301,21717888-21717972,21718045-21718165,
           21718244-21718368,21718940-21718984,21719082-21719345,
           21720067-21720111,21720182-21720212,21721644-21721693,
           21722433-21724310,21724406-21724564,21724821-21724939,
           21726917-21727059,21727670-21727735,21728184-21728317,
           21728454-21728591,21728927-21729186,21729295-21729406,
           21730727-21730909
          Length = 1344

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 11  GLPK*LARKIVLSVYYSFLNVIGINIKKSSRFINKKSLDLYHN 139
           G+P  LA  +V+S   SF N   IN+K +   + K+ L +  N
Sbjct: 332 GIPTDLALNLVVSEQVSFYNFETINLKCNLHLLTKEVLLVRRN 374


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,835,643
Number of Sequences: 37544
Number of extensions: 128628
Number of successful extensions: 188
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)