Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E15
         (348 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M97675-1|AAA60275.1|  937|Homo sapiens transmembrane receptor pr...    28   9.3  
BC128386-1|AAI28387.1|  940|Homo sapiens ROR1 protein protein.         28   9.3  
AL445205-2|CAH71706.1|  937|Homo sapiens receptor tyrosine kinas...    28   9.3  
AL161742-2|CAI21932.1|  937|Homo sapiens receptor tyrosine kinas...    28   9.3  
AL137859-2|CAI21732.1|  937|Homo sapiens receptor tyrosine kinas...    28   9.3  

>M97675-1|AAA60275.1|  937|Homo sapiens transmembrane receptor
           protein.
          Length = 937

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 344 ILYVLIL*STVSLPLAVKLLFCILC 270
           ILY+L+   +V++PLA+ LLF  +C
Sbjct: 404 ILYILV--PSVAIPLAIALLFFFIC 426


>BC128386-1|AAI28387.1|  940|Homo sapiens ROR1 protein protein.
          Length = 940

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 344 ILYVLIL*STVSLPLAVKLLFCILC 270
           ILY+L+   +V++PLA+ LLF  +C
Sbjct: 407 ILYILV--PSVAIPLAIALLFFFIC 429


>AL445205-2|CAH71706.1|  937|Homo sapiens receptor tyrosine
           kinase-like orphan receptor 1 protein.
          Length = 937

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 344 ILYVLIL*STVSLPLAVKLLFCILC 270
           ILY+L+   +V++PLA+ LLF  +C
Sbjct: 404 ILYILV--PSVAIPLAIALLFFFIC 426


>AL161742-2|CAI21932.1|  937|Homo sapiens receptor tyrosine
           kinase-like orphan receptor 1 protein.
          Length = 937

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 344 ILYVLIL*STVSLPLAVKLLFCILC 270
           ILY+L+   +V++PLA+ LLF  +C
Sbjct: 404 ILYILV--PSVAIPLAIALLFFFIC 426


>AL137859-2|CAI21732.1|  937|Homo sapiens receptor tyrosine
           kinase-like orphan receptor 1 protein.
          Length = 937

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 344 ILYVLIL*STVSLPLAVKLLFCILC 270
           ILY+L+   +V++PLA+ LLF  +C
Sbjct: 404 ILYILV--PSVAIPLAIALLFFFIC 426


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,448,923
Number of Sequences: 237096
Number of extensions: 800672
Number of successful extensions: 1011
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)