Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E15
         (348 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z82284-3|CAB05293.1|  350|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z92824-4|CAB07307.2|  395|Caenorhabditis elegans B0413.2 protein.      27   4.9  
U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine rece...    26   6.4  

>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical
           protein ZK675.1 protein.
          Length = 1405

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 311 SLPLAVKLLFCILCYHV*YVHI 246
           S+ LAV ++F + CY + YVHI
Sbjct: 133 SIILAVSMIFAVCCYGLQYVHI 154


>Z82284-3|CAB05293.1|  350|Caenorhabditis elegans Hypothetical
           protein T27E7.4 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -1

Query: 261 LIRS-YPIFXTRVFLQVPII--INTEWPTSSLQKT*YHVYLLIAL*YKSRLFLFINRDDF 91
           +IR+ Y  F  R F+ +P+I   +  W  S L     +  L   L Y SR+F  ++ D  
Sbjct: 177 IIRTLYKCFIIRDFVIIPVIAIFSIGW-LSELLPVGANATLKTQLTY-SRVFELVSNDSI 234

Query: 90  FIFIPIT 70
           F  +P+T
Sbjct: 235 FFLVPVT 241


>Z92824-4|CAB07307.2|  395|Caenorhabditis elegans B0413.2 protein.
          Length = 395

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 184 FLFAENIISCLFINCIVIQIKTFFIYKPR*LFYIYSYNIQK 62
           F F +  IS LF+N      + FF   PR L   + + IQK
Sbjct: 46  FCFEKTKISXLFLNGXKCTFRQFFTGIPRFLTLFFDFLIQK 86


>U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine
           receptor, class x protein47 protein.
          Length = 301

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = -3

Query: 244 YFLXTCFSSSTYHYKHRMANFLFAENIISCLFINCIVIQIKTFFIYKPR 98
           YF  +      YH  +   NF F       L I  +++ I  F IYK R
Sbjct: 145 YFWSSELHMFMYHVSNSCVNFSFYGIFCKYLTIIILILLIDLFSIYKAR 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,721,487
Number of Sequences: 27780
Number of extensions: 147807
Number of successful extensions: 297
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)