Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E12
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   0.99 
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    27   1.3  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    24   7.0  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    24   7.0  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    24   9.3  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    24   9.3  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    24   9.3  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    24   9.3  

>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 233 LVPAAVEQVIHKENAHRIQAKIIAEAANGPTTPAADKILI 352
           L+PA + +V  K+NA R  A   ++A    TTP A K ++
Sbjct: 96  LLPAVIAKVADKQNAVRDAAIAASKAIVRCTTPYAVKAIV 135


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 176 FPGAKPYEGENMLFEKCDILVPAAVEQVIHKENAHRIQAKIIAEAANGPT 325
           FP  KP  G N +FE+   L  + V +    E+       +   A +GPT
Sbjct: 468 FPSWKPDAGTNAMFEELAFLGGSIVAKTSFNESVSSHYVTLEEYAQHGPT 517


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
 Frame = +2

Query: 92  HDGSIYNHDGIDPKALEDYR------IENGTVVGFPGAKPYEGENMLFEKCDILVPAAVE 253
           ++ S ++H   DPKA           +E  + + F  A   +  ++  +    + P    
Sbjct: 579 NEASKFSHTSFDPKASSKSSNSLKESVEALSEIPFEDAPALDESDLSGDPFWAIQPKQSS 638

Query: 254 QVIHKENAHRIQAKI 298
             + KEN H IQ+K+
Sbjct: 639 SQVPKENHHNIQSKL 653


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 211 HVLTLVGLRTGESYDSPILDSIVLKSFGVNTIMVV 107
           +VL + G   G SY  PIL  ++LK   V +I  +
Sbjct: 416 YVLLIAG-GVGFSYTLPILRDLILKECNVTSITFI 449


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 227 DILVPAAVEQVIHKENAHRIQAKIIAEAANGPTTP 331
           D L+    E+V+ KE ++     + +   NGPT+P
Sbjct: 103 DTLIADRSEEVLLKEASYASYCGLSSIILNGPTSP 137


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 23  GNVGLHTCRYLVRAGATCIGIIEHD 97
           G +G    +YLV AG   +GI++ D
Sbjct: 52  GGLGCPAMQYLVAAGIGTLGIMDGD 76


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 197 EGENMLFEKC--DILVPAAVEQVIHKENAHRIQAKIIAEAANGPTTPAADKILIDRNILV 370
           +G N+   K   D L     +  I  E  HR+  + ++E   G TT   D  ++   I+ 
Sbjct: 17  KGSNIKLNKTLQDHLDELEEQFTIPTELLHRVTDRFVSELYKGLTTNPGDVPMVPTWIIG 76

Query: 371 IPD 379
            PD
Sbjct: 77  TPD 79


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/47 (19%), Positives = 25/47 (53%)
 Frame = -3

Query: 286 NPVCIFLVYNLFNGRGHEYVTFLKQHVLTLVGLRTGESYDSPILDSI 146
           NP   F++  +   +   ++  + +  + ++GLR+  S  +P+ +S+
Sbjct: 79  NPELDFMIEQICLSKNGRFLAVVGKSKIVILGLRSKLSEQNPLAESV 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,618,540
Number of Sequences: 5004
Number of extensions: 33025
Number of successful extensions: 74
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)