Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_E12
(381 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 95 2e-20
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595... 92 1e-19
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259... 89 1e-18
02_04_0656 - 24769069-24770814,24771552-24771608,24773307-247735... 29 0.94
02_01_0765 - 5694535-5694644,5695039-5696550,5697229-5697390,569... 29 1.6
11_06_0377 - 22900042-22900452,22900527-22902236 28 2.9
05_05_0209 - 23282848-23284110 28 2.9
09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121 27 3.8
08_02_0854 - 21905054-21906308,21906396-21907300 27 3.8
01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990 27 3.8
01_01_0426 + 3234987-3235935,3236744-3236782,3237044-3237409,324... 27 3.8
06_01_1182 + 10150911-10150979,10150984-10151457 27 5.0
03_02_0472 - 8737955-8738580,8738704-8738767,8739090-8739239,873... 27 6.6
10_08_0650 - 19591898-19593148 26 8.7
07_03_0992 + 23180165-23180720,23180732-23181162 26 8.7
02_05_0647 + 30601820-30601996,30602261-30602524 26 8.7
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 94.7 bits (225), Expect = 2e-20
Identities = 46/119 (38%), Positives = 70/119 (58%)
Frame = +2
Query: 23 GNVGLHTCRYLVRAGATCIGIIEHDGSIYNHDGIDPKALEDYRIENGTVVGFPGAKPYEG 202
GNVG R + G I + + GSI N +G+D AL +R E G + F A+ +
Sbjct: 215 GNVGSWAARIIHEKGGKVIALGDVTGSIRNKNGLDIPALMKHRNEGGALKDFHDAEVMDS 274
Query: 203 ENMLFEKCDILVPAAVEQVIHKENAHRIQAKIIAEAANGPTTPAADKILIDRNILVIPD 379
+L +CD+L+P A+ V+++ENA ++AK I EAAN PT P AD+IL + + ++PD
Sbjct: 275 SELLVHECDVLIPCALGGVLNRENAPDVKAKFIIEAANHPTDPEADEILAKKGVTILPD 333
>02_05_0144 +
26258841-26258948,26259099-26259212,26259335-26259556,
26259660-26259734,26259827-26259943,26260046-26260296,
26260833-26260908,26261045-26261131,26261216-26261401
Length = 411
Score = 92.3 bits (219), Expect = 1e-19
Identities = 44/119 (36%), Positives = 71/119 (59%)
Frame = +2
Query: 23 GNVGLHTCRYLVRAGATCIGIIEHDGSIYNHDGIDPKALEDYRIENGTVVGFPGAKPYEG 202
GNVG + + + G + + + G+I N GID AL +R E G++ F GA+ +
Sbjct: 215 GNVGSWAAKLIHQKGGKIVAVGDVTGAIRNKSGIDIPALLKHRSEGGSLEDFYGAEVMDA 274
Query: 203 ENMLFEKCDILVPAAVEQVIHKENAHRIQAKIIAEAANGPTTPAADKILIDRNILVIPD 379
+L +CD+LVP A+ V+++ENA ++A+ I E AN PT AD+IL + ++V+PD
Sbjct: 275 AELLVHECDVLVPCALGGVLNRENAAEVKARFIIEGANHPTDTEADEILAKKGVIVLPD 333
>03_06_0282 -
32824950-32825135,32825247-32825505,32825651-32825901,
32826309-32826425,32826613-32826687,32826788-32827009,
32827396-32827509,32827694-32827801
Length = 443
Score = 89.0 bits (211), Expect = 1e-18
Identities = 44/107 (41%), Positives = 65/107 (60%)
Frame = +2
Query: 23 GNVGLHTCRYLVRAGATCIGIIEHDGSIYNHDGIDPKALEDYRIENGTVVGFPGAKPYEG 202
GNVG + + AG I I + G++ N +G+D L + EN + GF G +
Sbjct: 215 GNVGSWAAQLISEAGGKVIAISDVTGAVKNSNGLDIAKLMKHSSENRGIKGFDGGDAIDP 274
Query: 203 ENMLFEKCDILVPAAVEQVIHKENAHRIQAKIIAEAANGPTTPAADK 343
++L E+CD+L+PAA+ VI+K+NA+ I+AK I EAAN PT P AD+
Sbjct: 275 RSLLTEECDVLIPAALGGVINKDNANEIKAKYIIEAANHPTDPEADE 321
>02_04_0656 -
24769069-24770814,24771552-24771608,24773307-24773582,
24773675-24773965
Length = 789
Score = 29.5 bits (63), Expect = 0.94
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 47 RYLVRAGATCIGIIEHDGSIYNHDGIDPKALEDYRIENGTVVGFPGAK 190
R LV AGA +G DG +G+ +ALE++ ++ TVV P ++
Sbjct: 664 RVLVAAGAAEVGTHRSDGQRLRCEGLTEEALEEF-LDGVTVVRGPQSR 710
>02_01_0765 -
5694535-5694644,5695039-5696550,5697229-5697390,
5698015-5698057
Length = 608
Score = 28.7 bits (61), Expect = 1.6
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +2
Query: 119 GIDPKALEDYRIENG--TVVGFPG--AKPYEGENMLFEKCDILVPAAVEQVIHKENAHRI 286
G DP A + YRIENG +VG PG N+ K D+ V V+ ++ E R
Sbjct: 293 GGDPLAQQIYRIENGIELIVGTPGRLIDLLMKHNVDLNKVDVFVLDEVDCLL--ERGFRD 350
Query: 287 QAKIIAEAANGP 322
Q I +A + P
Sbjct: 351 QVMQIFQALSHP 362
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 27.9 bits (59), Expect = 2.9
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +1
Query: 235 RARGR*TSYTQGKCTQDSG*DNRRGRQRAD----HAGSGQ 342
R R R T+G C +D G + RRGR D H G G+
Sbjct: 249 RGRARYGVETRGFCAEDVGDEGRRGRAHDDGHERHRGRGR 288
>05_05_0209 - 23282848-23284110
Length = 420
Score = 27.9 bits (59), Expect = 2.9
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Frame = -3
Query: 205 LTLVGLRTGESYDSPILDSIVLKSFGVNTIMVVDGAVVL----YDTDASGSG---PDQVP 47
+T + E+Y+ + S L +FG ++GA++L Y + G G P QV
Sbjct: 150 VTAAAVAQDEAYEEAMKSSAELATFGATAAFAIEGALILGYLKYPSSLDGCGRSPPAQVD 209
Query: 46 AGVQTHVTLV 17
V + + V
Sbjct: 210 LAVASFASTV 219
>09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121
Length = 798
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 62 PGPSTGRCADPRYPRAEFLQ 3
P PST + P+ PRAEF Q
Sbjct: 18 PSPSTENLSQPKRPRAEFSQ 37
>08_02_0854 - 21905054-21906308,21906396-21907300
Length = 719
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 62 PGPSTGRCADPRYPRAEFLQ 3
P PST + P+ PRAEF Q
Sbjct: 18 PSPSTENLSQPKRPRAEFSQ 37
>01_02_0057 -
10691403-10691420,10691525-10692998,10693086-10693990
Length = 798
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 62 PGPSTGRCADPRYPRAEFLQ 3
P PST + P+ PRAEF Q
Sbjct: 18 PSPSTENLSQPKRPRAEFSQ 37
>01_01_0426 +
3234987-3235935,3236744-3236782,3237044-3237409,
3240871-3242315
Length = 932
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 251 QRPRARVCHISQTACSHPRR 192
++PR R+ +S ACSH RR
Sbjct: 332 EKPRRRLLRLSAAACSHGRR 351
>06_01_1182 + 10150911-10150979,10150984-10151457
Length = 180
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 119 GIDPKALEDYRIENGTVVGFPGAKPYEG 202
G+D +A+E + NG VG G+KP EG
Sbjct: 23 GVDTEAVEA-EVHNGGRVGVRGSKPREG 49
>03_02_0472 -
8737955-8738580,8738704-8738767,8739090-8739239,
8739311-8739422,8739686-8739708
Length = 324
Score = 26.6 bits (56), Expect = 6.6
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = -2
Query: 242 RARVCHISQTACSHPRRASHRGILRQSHSRFYSPQELWGQYHHGCR-WSRRAL*Y--RCK 72
R R C + + RR +S+SR SPQ Y H C S+R+ Y R +
Sbjct: 230 RERSCSYDHSVSPYYRRCYSPSARGRSYSRSVSPQR---SYSHSCSPDSQRSGSYSPRKR 286
Query: 71 WLRPGPSTGRCADPRYPRAEF 9
+ PS R + R+ R +
Sbjct: 287 YSERKPSRSRSSGKRHSRESY 307
>10_08_0650 - 19591898-19593148
Length = 416
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 301 RRGRQRADHAGSGQDPDRPQHPGDPGP 381
RRGR+R G+ RP+ G P P
Sbjct: 75 RRGRRRFKRVDDGEVSLRPERGGSPAP 101
>07_03_0992 + 23180165-23180720,23180732-23181162
Length = 328
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 259 YTQGKCTQDSG*DNRRGRQRADHAGSGQDPDRPQHPGDPG 378
+ QG+ D+ + R G +R DH Q +HP D G
Sbjct: 146 WPQGRWRADAD-ELRHGGRRRDHVRPDQQAKHARHPQDEG 184
>02_05_0647 + 30601820-30601996,30602261-30602524
Length = 146
Score = 26.2 bits (55), Expect = 8.7
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 257 LVQRPRARVCHISQTACSHPRRASHRGILRQSHSRFYS 144
L RPRAR+CH C R+S+ + SRF S
Sbjct: 44 LAARPRARLCH-----CLRGMRSSYESMTVDGLSRFKS 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,779,267
Number of Sequences: 37544
Number of extensions: 261501
Number of successful extensions: 828
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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