Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E12
         (381 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.5  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 23  GNVGLHTCRYLVRAGATCIG 82
           G +G+     +V AGATC+G
Sbjct: 564 GGIGVVVLFAVVLAGATCLG 583


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
          protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 77 CKWLRPGPSTGRCAD 33
          CKWL  G +  R AD
Sbjct: 31 CKWLSEGGNDTRSAD 45


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 275  AHRIQAKIIAEAANGPTTPAADKIL 349
            A R   ++IAE   G + P+A+ I+
Sbjct: 975  ATRYTIRVIAEGPAGRSVPSAELIV 999



 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 97   VVLYDTDASGSGPDQVP 47
            V L     +G GPD++P
Sbjct: 1672 VALQQAANTGGGPDKIP 1688


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 275  AHRIQAKIIAEAANGPTTPAADKIL 349
            A R   ++IAE   G + P+A+ I+
Sbjct: 971  ATRYTIRVIAEGPAGRSVPSAELIV 995



 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 97   VVLYDTDASGSGPDQVP 47
            V L     +G GPD++P
Sbjct: 1668 VALQQAANTGGGPDKIP 1684


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,730
Number of Sequences: 438
Number of extensions: 2346
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)