Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E11
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    34   0.006
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   1.1  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    26   2.0  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    26   2.0  
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   2.6  
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    25   2.6  
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    25   3.4  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   3.4  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    25   3.4  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    25   4.5  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   4.5  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    24   6.0  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    24   7.9  

>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 34.3 bits (75), Expect = 0.006
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +3

Query: 240 QTLQQFWIKIMDDIKKINADDFKTQALPLARIKKIMK 350
           Q L ++W K +D ++  +    KT  LPLARIKK+MK
Sbjct: 84  QALAEYWQKTIDTLEH-DDQAVKTLHLPLARIKKVMK 119


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 225 AETTQQTLQQFWIKIMDDIKKINADD 302
           +E ++ + Q+ WI +MD +KK   D+
Sbjct: 443 SEPSENSFQKAWISLMDKLKKKEKDE 468


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 139 CASLFLLQTKPAPPMQVKRLRIMSVRIHRRRQLNKHFNNFGSK 267
           C S+    + P PPMQV R  I S++       N+  N + S+
Sbjct: 573 CHSVPQNSSYPRPPMQVNRSPIDSMQTIPHANFNEMHNAYSSR 615


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 151 FLLQTKPAPPMQVKRLRIMSVRIHRRRQLNKHF 249
           FLLQ+ P     +K L  + ++IH  R++ K F
Sbjct: 268 FLLQSSPYNASILKNLAEIYIKIHAPREILKQF 300


>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 132 SCIKNARRNDLQIVDYSFCF*KKSITNISY 43
           S  KN+  ND Q+    FC   KSI N  +
Sbjct: 33  SFCKNSLENDTQLPQILFCINPKSIRNFLF 62


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 291 NADDFKTQALPLARIKKIMKL 353
           N  + K Q LPL  IKKI K+
Sbjct: 16  NLQEVKPQVLPLEEIKKIYKI 36


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = +3

Query: 45  KIYL*LIFFKNKKNNQQFGGHCALHF*--YKMSVCFFVPASDQAGTSNAGEEIEDNVG-- 212
           K++L     K+   N +   +  LH    Y   +   + A+D++G     EE+E+NV   
Sbjct: 277 KLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATDESGMMGEIEELENNVDFV 336

Query: 213 EDSQAETTQQTLQQ 254
           E+    T Q TL +
Sbjct: 337 EEEVISTDQPTLDK 350


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = -2

Query: 146 EAHGHLVLKMQGAMTSKLLIILFVFEKNQLQIYLIRKTR 30
           E H  LV    G++T + ++  F F K  ++++ ++  +
Sbjct: 309 ETHTILVSDNSGSLTKQDILSYFAFIKGNIEVFFLKSPK 347


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 219 SQAETTQQTLQQFWIKIMDDIKKIN 293
           SQ+  T+QT++QF +KI +   K N
Sbjct: 407 SQSHLTKQTVRQFLVKITELHSKTN 431


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 73  KTKRIINNLEVIAPCIFNTRCPCASLFL--LQTKPAPPMQVKRLRI 204
           K K +    E+++ C+F    P ASLF+  +  +  P     RL+I
Sbjct: 141 KFKNLSLRDEMVSDCVFADEVPLASLFVENVCNETIPSQSCVRLKI 186


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +3

Query: 198 EDNVGEDSQAETTQQTLQQFWIKIMDDIKK 287
           ED + ++   ET ++ + + W+K+ +DI +
Sbjct: 635 EDELKDEGYIETYERYVPKSWMKVPEDITR 664


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 34  VFLIRYICN*FFSKTKRI-INNLEVIAPCIFNT 129
           V L+ +IC+  + KTKRI ++N+++     + T
Sbjct: 524 VILVFFICHKLYYKTKRITLSNMDLETDFAYKT 556


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
 Frame = +3

Query: 60  LIFFKNKKNNQQF-GGHCALHF*YKMSVCFFVPASDQAGTSNAGEEIEDNVGEDSQAETT 236
           ++ + NK  N  +    C L     +S C   P  D A   NAG      +G   +A   
Sbjct: 469 MLNYLNKSFNSYYHAARCFLLLGQFLS-CLPAPKVDDAANWNAGLLYSKRLGPVGRAMIF 527

Query: 237 QQTLQQFWIKIMDDIKKINADDFKTQ 314
           QQT   F  K +  +K  + D F  +
Sbjct: 528 QQTHTLF--KSLSYLKTESTDPFSNK 551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,379,636
Number of Sequences: 5004
Number of extensions: 24714
Number of successful extensions: 80
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)