Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E11
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                27   0.086
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   7.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   7.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 26.6 bits (56), Expect = 0.086
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
 Frame = -1

Query: 300 HQHLSS*YHPLF*SKIVE------VFVELSPPVNPHRHYPQSL-HLHWR 175
           HQH  S YHP   S          +   + PP + H H  QSL HLH+R
Sbjct: 319 HQHHPSQYHPHRGSSPHHQHGNHTMGPTMGPPHHHHHHQTQSLQHLHYR 367



 Score = 25.8 bits (54), Expect = 0.15
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 234 LSPPVNPHRHYPQSLHLH 181
           L P  +PH+H+P   H H
Sbjct: 312 LPPSYHPHQHHPSQYHPH 329


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 140 VLLCSCFRPSR 172
           +LL SC RPSR
Sbjct: 11  LLLSSCTRPSR 21


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 140 VLLCSCFRPSR 172
           +LL SC RPSR
Sbjct: 11  LLLSSCTRPSR 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,159
Number of Sequences: 438
Number of extensions: 1530
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)