Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E10
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    73   1e-14
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    29   0.16 
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    29   0.16 
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    26   2.0  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   2.7  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   3.5  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   3.5  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    25   3.5  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   4.7  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   4.7  
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   4.7  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   6.2  
SPAC1952.14c |mrpl25||mitochondrial ribosomal protein subunit L2...    24   8.2  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 72.9 bits (171), Expect = 1e-14
 Identities = 48/126 (38%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
 Frame = +3

Query: 9   GTRKKVHVIFSYKG-------KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKV 167
           G   +VH IF +K        + HL  +         T+LYTLIVKPD T+EV I+ + V
Sbjct: 164 GVNDRVHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTLIVKPDQTFEVRINGDVV 223

Query: 168 ESGELEADW--DFLPPFTIKDPEAKKPEDWXX--XXXXXXXXXXXXXXXXXXXHIPDPDA 335
             G L  D+    LPP  I DPE  KP DW                        IPDPDA
Sbjct: 224 RQGSLFYDFIPPVLPPVEIYDPEDIKPADWVDEPEIPDPNAVKPDDWDEDAPRMIPDPDA 283

Query: 336 SKPEDW 353
            KPEDW
Sbjct: 284 VKPEDW 289



 Score = 32.3 bits (70), Expect = 0.023
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +3

Query: 189 DWDFLPPFTIKDPEAKKPEDW 251
           DW    P  I DPEA+KPEDW
Sbjct: 288 DWLEDEPLYIPDPEAQKPEDW 308


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +3

Query: 39  SYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELE-ADWDFLPPFT 215
           S + K H  KK    +D  Y+H+Y +   P +   + +  ++ ES + E  + D+LP   
Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPESLKKENNNSDYLPKSA 196

Query: 216 IKDPEAKKPED 248
           +K  +   P+D
Sbjct: 197 MKQKKG-GPKD 206


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 19/81 (23%), Positives = 35/81 (43%)
 Frame = +3

Query: 3    IFGTRKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGEL 182
            I+G    V +  +   KNH ++     K+ V      L +  DN Y+ ++ + K +   L
Sbjct: 979  IYGDTDSVMLNTNVTDKNHALRIGNEFKEKVNERYSKLEIDIDNVYQRMLLHAKKKYAAL 1038

Query: 183  EADWDFLPPFTIKDPEAKKPE 245
            + D    P   +K  + K+ E
Sbjct: 1039 QLDSQGKPNLDVKGLDMKRRE 1059


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 87  DDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPFTIKDPEAKKPED 248
           D +Y  L +L+ +  N+YE  +    + + +    W FL      D E KK ++
Sbjct: 753 DIIYERLVSLLSRVPNSYEDTLKFSAINTLQSLLFWFFLRKDNPADEEKKKDDE 806


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 187 PTGTSYLLLRSRIQKQRNLKIGTTNPQSPTRKTRNPRTGTNLST 318
           P  +S L +RS+ QK  +       P +PT  T NP + TN +T
Sbjct: 598 PNASSPLDVRSK-QKPSSANSNAPTP-APTVNTTNPESSTNEAT 639


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 57  HLIKKDIRCKDDVYTHLYTLI--VKPDNTYEVLIDNEKVESGE 179
           HL      C   + T+L+ L   V P   YE L++ EK+E  E
Sbjct: 840 HLTSDLFACTSVLKTYLHRLPEPVIPGTQYEELLEAEKIEKEE 882


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 57  HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVE 170
           H I + +  +++ + HL TL  KPD+   ++ID E +E
Sbjct: 686 HTINQ-LSSREEAHNHLLTLRNKPDSC--LIIDGESME 720


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 189 DWDFLPPFTIKDPEAKKPEDW 251
           DWD +P +  K  EA KP DW
Sbjct: 209 DWDDVP-WREKPLEAMKPRDW 228


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 223 IQKQRNLKIGTTNPQSPTRKTRNPRTGTNLSTFRTLMPVSL 345
           IQ   NL+    N  +      +P++ T LSTFR   P+SL
Sbjct: 237 IQNSNNLE----NTGAFVENANSPQSNTPLSTFRHSSPLSL 273


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -2

Query: 195 PSRLLIHQIQPSHCR*GPRK--CYPVSR*ECTSA 100
           P+   +HQ+QP+ C   P    C P++   C  A
Sbjct: 731 PNIYALHQLQPTDCLPDPENTGCLPINMPLCVRA 764


>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -3

Query: 359 IIPIFRLTGIRVRNVLRFVPVLGFLVFRVGDCGFVVPIFRFLCFWILDRKRR*EVP 192
           ++ ++RL       VL  +PV    V R   CG+  P+   +   I  R+RR ++P
Sbjct: 21  LVRVYRLVKSLALIVLPVLPVYTSKVLRCSHCGWYEPVDSAM---IDQRRRREDLP 73


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 168 ESGELEADWDFLPPFTIKDPEAKKPEDW 251
           E   L+     LP    K P AKKPED+
Sbjct: 157 EKNTLDLKHCLLPSPEYKAPPAKKPEDY 184


>SPAC1952.14c |mrpl25||mitochondrial ribosomal protein subunit
           L25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 253 TTNP--QSPTRKTRNPRTGTNLSTF 321
           TTNP  Q+P   TRNP+ G  ++ +
Sbjct: 32  TTNPNRQNPFLATRNPQNGLVINPY 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,350,768
Number of Sequences: 5004
Number of extensions: 26888
Number of successful extensions: 103
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)