Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E10
         (361 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   147   2e-36
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   147   2e-36
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    48   2e-06
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    30   0.42 
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    30   0.42 
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    30   0.42 
AF014940-10|AAK73900.1|  243|Caenorhabditis elegans Hypothetical...    29   0.98 
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    27   3.0  
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    27   3.0  
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    27   3.0  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    27   5.2  
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    26   6.9  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    26   6.9  
AF016655-12|AAK31438.3| 1143|Caenorhabditis elegans Guanylyl cyc...    26   9.1  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  147 bits (357), Expect = 2e-36
 Identities = 67/119 (56%), Positives = 76/119 (63%)
 Frame = +3

Query: 3   IFGTRKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGEL 182
           I G  ++VHVI +YKG+N LIKK+I CK D  THLYTLI+  DNTYEV ID E  ++G L
Sbjct: 132 ICGPTRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSL 191

Query: 183 EADWDFLPPFTIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDPDASKPEDWDD 359
           E DWD LP   IKDP+AKKPEDW                     HIPDPDA KPEDWDD
Sbjct: 192 EEDWDLLPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWEKPEHIPDPDAKKPEDWDD 250


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  147 bits (357), Expect = 2e-36
 Identities = 67/119 (56%), Positives = 76/119 (63%)
 Frame = +3

Query: 3   IFGTRKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGEL 182
           I G  ++VHVI +YKG+N LIKK+I CK D  THLYTLI+  DNTYEV ID E  ++G L
Sbjct: 132 ICGPTRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSL 191

Query: 183 EADWDFLPPFTIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDPDASKPEDWDD 359
           E DWD LP   IKDP+AKKPEDW                     HIPDPDA KPEDWDD
Sbjct: 192 EEDWDLLPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWEKPEHIPDPDAKKPEDWDD 250


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 37/131 (28%), Positives = 51/131 (38%), Gaps = 14/131 (10%)
 Frame = +3

Query: 9   GTRKKVHVIFSYKGKNHLIKKDIRCK----------DDVYTHLYTLIVKPDNTYEVLIDN 158
           G   KVH+IF YK   +    +              DD  THL+TL+VKP   Y V +D 
Sbjct: 187 GATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDHNTHLFTLVVKPTGEYSVSVDG 246

Query: 159 EKVESGELEADWD--FLPPFTIKDPEAKKPEDWXXXXXXXXXXXX--XXXXXXXXXHIPD 326
           + +  G + +D      PP  I D    KP DW                        + D
Sbjct: 247 KSLYYGNMMSDVTPALTPPKQIFDETDLKPVDWDERENIEDESAVKPDDWDENEPQSVVD 306

Query: 327 PDASKPEDWDD 359
             A+KP DW++
Sbjct: 307 EAATKPYDWNE 317



 Score = 33.9 bits (74), Expect = 0.034
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 120 VKPDNTYEVLIDNEKVESGELEADWDFLPPFTIKDPEAKKPEDW 251
           VKPD+  E    +   E+     DW+      I DPEAKKP+DW
Sbjct: 291 VKPDDWDENEPQSVVDEAATKPYDWNEEENELIADPEAKKPQDW 334


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 51    KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 173
             K   I+K++ C+D   THL  L    D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 51    KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 173
             K   I+K++ C+D   THL  L    D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +3

Query: 96  YTHLYTLIVKPDN-TYEVLIDNEKVESGELEADWDFLPP--FTIKDP 227
           +TH +TL VKP N  Y+   DN+ ++  + E    F  P  F  K P
Sbjct: 23  HTHKWTLFVKPGNRDYDEFPDNKLIQKVKFEIHESFAQPVRFVTKPP 69


>AF014940-10|AAK73900.1|  243|Caenorhabditis elegans Hypothetical
           protein W02D7.10 protein.
          Length = 243

 Score = 29.1 bits (62), Expect = 0.98
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 357 HPNLQAYWHQGPECAQVCPSPRVSCLPGRGLWVCRP 250
           +PN   YW  G    Q+ P P V    G+ L+   P
Sbjct: 170 YPNQTYYWSDGSASEQMVPQPEVIAPGGKALYTFDP 205


>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 354  PNLQAYWHQGPECAQVCPSPRVSCLPGRGLWVCRPN 247
            PN      +G    + CP+P   C P  G  VC PN
Sbjct: 1121 PNFYGLTSEGCTECEPCPAPGQVCDPIDGSCVCPPN 1156


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 354  PNLQAYWHQGPECAQVCPSPRVSCLPGRGLWVCRPN 247
            PN      +G    + CP+P   C P  G  VC PN
Sbjct: 1121 PNFYGLTSEGCTECEPCPAPGQVCDPIDGSCVCPPN 1156


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3102

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 354  PNLQAYWHQGPECAQVCPSPRVSCLPGRGLWVCRPN 247
            PN      +G    + CP+P   C P  G  VC PN
Sbjct: 1121 PNFYGLTSEGCTECEPCPAPGQVCDPIDGSCVCPPN 1156


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 253 TTNPQSPTRKTRNPRTGTNLSTFRTLMPVS 342
           TT P +PT  T  P T T   T  T  P +
Sbjct: 75  TTTPTTPTTTTTTPTTTTTTPTTTTTTPTT 104


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 224 SRSKET*RLGRQTHNPRPGRQETRGLGQT*AHS 322
           SRS+   RL R++ +PR  R+E R + ++ + S
Sbjct: 224 SRSRSAERLRRKSRSPRRSREEPRKMSRSRSRS 256


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 224 SRSKET*RLGRQTHNPRPGRQETRGLGQT*AHS 322
           SRS+   RL R++ +PR  R+E R + ++ + S
Sbjct: 224 SRSRSAERLRRKSRSPRRSREEPRKMSRSRSRS 256


>AF016655-12|AAK31438.3| 1143|Caenorhabditis elegans Guanylyl
           cyclase protein 19 protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 308 FVPVLGFLVFRVGDCGFVVPIFRFLCFWILDRKRR*E 198
           FV   G LVF +G       +F   CF+ + R++R E
Sbjct: 454 FVDQYGALVFAIGGVLIFAMLFVITCFFYVMRQKRLE 490


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,494,031
Number of Sequences: 27780
Number of extensions: 155734
Number of successful extensions: 488
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)